Software Packages

Department of Quantitative Health Sciences
Mayo Clinic Research
Formerly known as the Department of Health Sciences Research

Related links: Division Overview R Shiny Applications


Exogene: A workflow for detecting viral integrations and viral presence from sequencing data. The workflow takes as input paired-end short reads (WGS, WES, or targeted capture) or long reads from PacBio platforms, and can jointly call events if both types are present.


Usage information can be found here:
Docker Hub link:

Page last modified: August 16, 2021