Exogene
Exogene: A workflow for detecting viral integrations and viral presence from sequencing data. The workflow takes as input paired-end short reads (WGS, WES, or targeted capture) or long reads from PacBio platforms, and can jointly call events if both types are present.
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Usage information can be found here: https://github.com/zstephens/exogene
Docker Hub link: https://hub.docker.com/repository/docker/zstephens/exogene
Page last modified: August 16, 2021