Software Packages

Department of Quantitative Health Sciences
Mayo Clinic Research
Formerly known as the Department of Health Sciences Research

Related links: Division Overview R Shiny Applications
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All | Alignment | Assemblers | ChIP | Copy Number Variants | Exome | Mate Pair | Methylation | Microbiome | Pathway Analysis | Proteins | RNA | SNP/SNV | Structural Variants | Visualization | R Packages | SAS Macros | Survival Analysis


ChIP-RNA-seqPRO is a resource motivated by this current need and provides a strategy that enables the user to profile regulatory associations between epigenomic modifications and co/post-transcriptional processes.

HiChIP Pipeline

HiChIP: A high-throughput pipeline for integrative analysis of ChIP-Seq data HiChIP pipeline is designed for performing comprehensive analysis of chromatin immunoprecipitation and sequencing (ChIP-Seq) data. It can be used to analyze profiles from transcription factor binding, histone modifications, histone variants, and chromatin regulators. Paired-end and single-end NexGen sequencing data from ChIP experiment with different antibodies, […]