Software Packages

Department of Quantitative Health Sciences
Mayo Clinic Research
Formerly known as the Department of Health Sciences Research

Related links: Division Overview R Shiny Applications

Exogene

Exogene: A workflow for detecting viral integrations and viral presence from sequencing data. The workflow takes as input paired-end short reads (WGS, WES, or targeted capture) or long reads from PacBio platforms, and can jointly call events if both types are present.

Author:

Usage information can be found here: https://github.com/zstephens/exogene
Docker Hub link: https://hub.docker.com/repository/docker/zstephens/exogene

Page last modified: January 22, 2021