Biomedical Statistics and Informatics Software Packages


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All | Alignment | Assemblers | ChIP | Copy Number Variants | Exome | Mate Pair | Methylation | Microbiome | Pathway Analysis | Proteins | RNA | SNP/SNV | Structural Variants | Visualization | R Packages | SAS Macros | Survival Analysis

bnmlci

Exact confidence intervals for a proportion.

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boot

Select bootstrap samples.

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comprisk

Cumulative incidence in the presence of competing risks.

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criskcox

Competing risk survival analysis with covariates.

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dist

Estimates the distance matrix between two groups (e.g. cases and potential controls) on the basis of a set of X’s.

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findcut

Uses the method of Contal and O’Quigley (1999) to find the best cutpoint in a continuous variable with regards to a survival outcome.

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gmatch

Computerized matching of cases to controls using the greedy matching algorithm

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jitplot

Produce gplot of continuous variable(y-axis) vs a group variable(x-axis) in such a way that no points are hidden.

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logisuni

Univariate logistic regression model summaries with multiple dependent variables and predictors.

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mccc

Computes Lin’s concordance correlation coefficient (CCC) for any number of raters.

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nesttest

Conducts likelihood ratio tests for nested logistic and Cox proportional hazards models.

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newsurv

Uses Graph Template Language to create a highly customizabile Kaplan-Meier curve.

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nobs

This macro creates a macro variable containing the number of observations in a SAS dataset.

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outsumm

Creates a single RTF file containing multiple tables created by %SUMMARY.

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plotcorr

Proc Plot with correlation/regression statistics appended.

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plotmat

Create a scatterplot matrix graphically displaying the bivariate relationships between a number of variables.

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rocplus

Estimated Integrated Discrimination Index (IDI) and Net Reclassification Improvement (NRI) for comparison of a new risk model to an old model.

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schoen

Schoenfeld residuals for proportional hazards model.

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summary

Creates a table of variable summaries plus test statistics for the difference between two or more independent samples.

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surv

Complete Kaplan-Meier survival analysis with printing options and logrank statistic.

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survcstd

Calculates the c-statistic (concordance, discrimination index) for survived data with time dependent covariates

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survlrk

Calculates logrank statatistics for the surv macro.

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survlt

General survival statistics p(t), standard error, confidence limits, and median survival time, for the left-truncated survival analyses.

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survplot

Creates high-quality and easily customized Kaplan-Meier plots.

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symmchk

Checks for symmetry and suggests the best power transformation, if one exists, to make an asymmetric distribution symmetric

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uagreemt

Measures agreement, precision, accuracy, total deviation index and coverage probability.

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vmatch

Computerized matching of cases to controls using variable optimal matching.

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