Fri Dec 28 12:31:26 CST 2007
Working Directory full path value: /home/m037385/snppicker_paper
Logging to: /home/m037385/snppicker_paper/log
Install Directory value: /home/m026366/bin/SNPApp

Running bin_all_genes.csh with following parameters: 
Bin Genes Parameters:
Gene Input File:         kullo_genes2.txt
Data Source:             Hapmap,Seattle,niehs
Ethnicity:               EUR
Base Pair Upstream:      5000
Base Pair Downstream:    5000
R Squared Value:         0.90
Minor Allele Frequency:  0.05
Illumina Score Directory:  .
Database Parameters:
Sybase Home Path:  /opt/sybase-12.5
Sybase bin Path:  /opt/sybase-12.5/OCS-12_5/bin
Java bin Path:  /usr/local/bin
Sybase Interface Server Name:  SNP_SELECT
Sybase database Name:  bc_e_snpselect
Sybase database User:  bc_e_snpselect_reader
Sybase Database Host:  lbidb.mayo.edu
Sybase Database Port:  4100
Sybase Database Temporary Table:  snpsel_1231_29326

Now logging to: /home/m037385/snppicker_paper/SNPApp_EUR_0.90_0.05_1228_1231/log
Creating working directories. 12:31:26
Completed creation of working directories. 12:31:27

Processing 1 of 161 genes for data source: Hapmap. Gene ID: 19 Time: 12:31:27
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 2 of 161 genes for data source: Hapmap. Gene ID: 133 Time: 12:31:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 3 of 161 genes for data source: Hapmap. Gene ID: 186 Time: 12:31:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 4 of 161 genes for data source: Hapmap. Gene ID: 239 Time: 12:31:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 5 of 161 genes for data source: Hapmap. Gene ID: 337 Time: 12:31:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 6 of 161 genes for data source: Hapmap. Gene ID: 338 Time: 12:31:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 7 of 161 genes for data source: Hapmap. Gene ID: 345 Time: 12:31:42
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 8 of 161 genes for data source: Hapmap. Gene ID: 348 Time: 12:31:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 9 of 161 genes for data source: Hapmap. Gene ID: 462 Time: 12:31:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 10 of 161 genes for data source: Hapmap. Gene ID: 551 Time: 12:31:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 11 of 161 genes for data source: Hapmap. Gene ID: 558 Time: 12:31:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 12 of 161 genes for data source: Hapmap. Gene ID: 624 Time: 12:31:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 13 of 161 genes for data source: Hapmap. Gene ID: 719 Time: 12:31:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 14 of 161 genes for data source: Hapmap. Gene ID: 1071 Time: 12:31:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 15 of 161 genes for data source: Hapmap. Gene ID: 1163 Time: 12:31:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 16 of 161 genes for data source: Hapmap. Gene ID: 1185 Time: 12:31:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 17 of 161 genes for data source: Hapmap. Gene ID: 1232 Time: 12:31:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 18 of 161 genes for data source: Hapmap. Gene ID: 1296 Time: 12:31:59
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 19 of 161 genes for data source: Hapmap. Gene ID: 1307 Time: 12:32:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 20 of 161 genes for data source: Hapmap. Gene ID: 1524 Time: 12:32:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 21 of 161 genes for data source: Hapmap. Gene ID: 1584 Time: 12:32:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 22 of 161 genes for data source: Hapmap. Gene ID: 1649 Time: 12:32:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 23 of 161 genes for data source: Hapmap. Gene ID: 1786 Time: 12:32:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 24 of 161 genes for data source: Hapmap. Gene ID: 1889 Time: 12:32:09
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 25 of 161 genes for data source: Hapmap. Gene ID: 1906 Time: 12:32:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 26 of 161 genes for data source: Hapmap. Gene ID: 2147 Time: 12:32:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 27 of 161 genes for data source: Hapmap. Gene ID: 2152 Time: 12:32:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 28 of 161 genes for data source: Hapmap. Gene ID: 2153 Time: 12:32:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 29 of 161 genes for data source: Hapmap. Gene ID: 2155 Time: 12:32:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 30 of 161 genes for data source: Hapmap. Gene ID: 2157 Time: 12:32:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 31 of 161 genes for data source: Hapmap. Gene ID: 2159 Time: 12:32:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 32 of 161 genes for data source: Hapmap. Gene ID: 2161 Time: 12:32:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 33 of 161 genes for data source: Hapmap. Gene ID: 2162 Time: 12:32:25
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 34 of 161 genes for data source: Hapmap. Gene ID: 2165 Time: 12:32:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 35 of 161 genes for data source: Hapmap. Gene ID: 2169 Time: 12:32:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 36 of 161 genes for data source: Hapmap. Gene ID: 2170 Time: 12:32:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 37 of 161 genes for data source: Hapmap. Gene ID: 2244 Time: 12:32:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 38 of 161 genes for data source: Hapmap. Gene ID: 2593 Time: 12:32:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 39 of 161 genes for data source: Hapmap. Gene ID: 2624 Time: 12:32:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 40 of 161 genes for data source: Hapmap. Gene ID: 2641 Time: 12:32:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 41 of 161 genes for data source: Hapmap. Gene ID: 2701 Time: 12:32:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 42 of 161 genes for data source: Hapmap. Gene ID: 2744 Time: 12:32:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 43 of 161 genes for data source: Hapmap. Gene ID: 2811 Time: 12:32:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 44 of 161 genes for data source: Hapmap. Gene ID: 3034 Time: 12:32:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 45 of 161 genes for data source: Hapmap. Gene ID: 3075 Time: 12:32:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 46 of 161 genes for data source: Hapmap. Gene ID: 3082 Time: 12:32:56
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 47 of 161 genes for data source: Hapmap. Gene ID: 3315 Time: 12:32:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 48 of 161 genes for data source: Hapmap. Gene ID: 3329 Time: 12:32:59
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 49 of 161 genes for data source: Hapmap. Gene ID: 3336 Time: 12:33:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 50 of 161 genes for data source: Hapmap. Gene ID: 3362 Time: 12:33:02
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 51 of 161 genes for data source: Hapmap. Gene ID: 3455 Time: 12:33:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 52 of 161 genes for data source: Hapmap. Gene ID: 3459 Time: 12:33:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 53 of 161 genes for data source: Hapmap. Gene ID: 3460 Time: 12:33:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 54 of 161 genes for data source: Hapmap. Gene ID: 3552 Time: 12:33:08
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 55 of 161 genes for data source: Hapmap. Gene ID: 3565 Time: 12:33:09
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 56 of 161 genes for data source: Hapmap. Gene ID: 3578 Time: 12:33:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 57 of 161 genes for data source: Hapmap. Gene ID: 3596 Time: 12:33:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 58 of 161 genes for data source: Hapmap. Gene ID: 3601 Time: 12:33:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 59 of 161 genes for data source: Hapmap. Gene ID: 3606 Time: 12:33:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 60 of 161 genes for data source: Hapmap. Gene ID: 3690 Time: 12:33:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 61 of 161 genes for data source: Hapmap. Gene ID: 3952 Time: 12:33:20
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 62 of 161 genes for data source: Hapmap. Gene ID: 3990 Time: 12:33:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 63 of 161 genes for data source: Hapmap. Gene ID: 4023 Time: 12:33:27
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 64 of 161 genes for data source: Hapmap. Gene ID: 4025 Time: 12:33:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 65 of 161 genes for data source: Hapmap. Gene ID: 4036 Time: 12:33:31
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 66 of 161 genes for data source: Hapmap. Gene ID: 4048 Time: 12:33:37
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 67 of 161 genes for data source: Hapmap. Gene ID: 4049 Time: 12:33:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 68 of 161 genes for data source: Hapmap. Gene ID: 4141 Time: 12:33:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 69 of 161 genes for data source: Hapmap. Gene ID: 4254 Time: 12:33:42
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 70 of 161 genes for data source: Hapmap. Gene ID: 4312 Time: 12:33:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 71 of 161 genes for data source: Hapmap. Gene ID: 4313 Time: 12:33:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 72 of 161 genes for data source: Hapmap. Gene ID: 4353 Time: 12:33:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 73 of 161 genes for data source: Hapmap. Gene ID: 4524 Time: 12:33:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 74 of 161 genes for data source: Hapmap. Gene ID: 4548 Time: 12:33:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 75 of 161 genes for data source: Hapmap. Gene ID: 4681 Time: 12:33:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 76 of 161 genes for data source: Hapmap. Gene ID: 4878 Time: 12:33:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 77 of 161 genes for data source: Hapmap. Gene ID: 4879 Time: 12:33:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 78 of 161 genes for data source: Hapmap. Gene ID: 5054 Time: 12:33:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 79 of 161 genes for data source: Hapmap. Gene ID: 5069 Time: 12:34:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 80 of 161 genes for data source: Hapmap. Gene ID: 5196 Time: 12:34:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 81 of 161 genes for data source: Hapmap. Gene ID: 5329 Time: 12:34:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 82 of 161 genes for data source: Hapmap. Gene ID: 5340 Time: 12:34:09
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 83 of 161 genes for data source: Hapmap. Gene ID: 5444 Time: 12:34:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 84 of 161 genes for data source: Hapmap. Gene ID: 5445 Time: 12:34:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 85 of 161 genes for data source: Hapmap. Gene ID: 5446 Time: 12:34:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 86 of 161 genes for data source: Hapmap. Gene ID: 5473 Time: 12:34:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 87 of 161 genes for data source: Hapmap. Gene ID: 5654 Time: 12:34:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 88 of 161 genes for data source: Hapmap. Gene ID: 5687 Time: 12:34:20
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 89 of 161 genes for data source: Hapmap. Gene ID: 5724 Time: 12:34:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 90 of 161 genes for data source: Hapmap. Gene ID: 5742 Time: 12:34:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 91 of 161 genes for data source: Hapmap. Gene ID: 5901 Time: 12:34:25
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 92 of 161 genes for data source: Hapmap. Gene ID: 6005 Time: 12:34:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 93 of 161 genes for data source: Hapmap. Gene ID: 6098 Time: 12:34:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 94 of 161 genes for data source: Hapmap. Gene ID: 6288 Time: 12:34:32
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 95 of 161 genes for data source: Hapmap. Gene ID: 6320 Time: 12:34:33
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 96 of 161 genes for data source: Hapmap. Gene ID: 6337 Time: 12:34:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 97 of 161 genes for data source: Hapmap. Gene ID: 6347 Time: 12:34:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 98 of 161 genes for data source: Hapmap. Gene ID: 6352 Time: 12:34:37
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 99 of 161 genes for data source: Hapmap. Gene ID: 6403 Time: 12:34:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 100 of 161 genes for data source: Hapmap. Gene ID: 6464 Time: 12:34:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 101 of 161 genes for data source: Hapmap. Gene ID: 6649 Time: 12:34:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 102 of 161 genes for data source: Hapmap. Gene ID: 6696 Time: 12:34:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 103 of 161 genes for data source: Hapmap. Gene ID: 6754 Time: 12:34:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 104 of 161 genes for data source: Hapmap. Gene ID: 6772 Time: 12:34:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 105 of 161 genes for data source: Hapmap. Gene ID: 7035 Time: 12:34:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 106 of 161 genes for data source: Hapmap. Gene ID: 7056 Time: 12:34:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 107 of 161 genes for data source: Hapmap. Gene ID: 7060 Time: 12:34:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 108 of 161 genes for data source: Hapmap. Gene ID: 7076 Time: 12:34:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 109 of 161 genes for data source: Hapmap. Gene ID: 7099 Time: 12:34:56
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 110 of 161 genes for data source: Hapmap. Gene ID: 7124 Time: 12:34:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 111 of 161 genes for data source: Hapmap. Gene ID: 7132 Time: 12:34:59
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 112 of 161 genes for data source: Hapmap. Gene ID: 7133 Time: 12:35:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 113 of 161 genes for data source: Hapmap. Gene ID: 7292 Time: 12:35:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 114 of 161 genes for data source: Hapmap. Gene ID: 7391 Time: 12:35:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 115 of 161 genes for data source: Hapmap. Gene ID: 7450 Time: 12:35:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 116 of 161 genes for data source: Hapmap. Gene ID: 7941 Time: 12:35:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 117 of 161 genes for data source: Hapmap. Gene ID: 8402 Time: 12:35:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 118 of 161 genes for data source: Hapmap. Gene ID: 8516 Time: 12:35:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 119 of 161 genes for data source: Hapmap. Gene ID: 8673 Time: 12:35:20
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 120 of 161 genes for data source: Hapmap. Gene ID: 8743 Time: 12:35:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 121 of 161 genes for data source: Hapmap. Gene ID: 8882 Time: 12:35:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 122 of 161 genes for data source: Hapmap. Gene ID: 9370 Time: 12:35:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 123 of 161 genes for data source: Hapmap. Gene ID: 10082 Time: 12:35:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 124 of 161 genes for data source: Hapmap. Gene ID: 10498 Time: 12:39:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 125 of 161 genes for data source: Hapmap. Gene ID: 10544 Time: 12:39:37
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 126 of 161 genes for data source: Hapmap. Gene ID: 10791 Time: 12:39:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 127 of 161 genes for data source: Hapmap. Gene ID: 10875 Time: 12:39:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 128 of 161 genes for data source: Hapmap. Gene ID: 11100 Time: 12:39:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 129 of 161 genes for data source: Hapmap. Gene ID: 22937 Time: 12:39:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 130 of 161 genes for data source: Hapmap. Gene ID: 23460 Time: 12:39:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 131 of 161 genes for data source: Hapmap. Gene ID: 25879 Time: 12:39:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 132 of 161 genes for data source: Hapmap. Gene ID: 25930 Time: 12:39:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 133 of 161 genes for data source: Hapmap. Gene ID: 25977 Time: 12:39:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 134 of 161 genes for data source: Hapmap. Gene ID: 26119 Time: 12:39:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 135 of 161 genes for data source: Hapmap. Gene ID: 30814 Time: 12:39:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 136 of 161 genes for data source: Hapmap. Gene ID: 50848 Time: 12:39:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 137 of 161 genes for data source: Hapmap. Gene ID: 51538 Time: 12:39:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 138 of 161 genes for data source: Hapmap. Gene ID: 51738 Time: 12:39:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 139 of 161 genes for data source: Hapmap. Gene ID: 54936 Time: 12:39:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 140 of 161 genes for data source: Hapmap. Gene ID: 54947 Time: 12:40:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 141 of 161 genes for data source: Hapmap. Gene ID: 56158 Time: 12:40:02
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 142 of 161 genes for data source: Hapmap. Gene ID: 56729 Time: 12:40:04
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 143 of 161 genes for data source: Hapmap. Gene ID: 57085 Time: 12:40:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 144 of 161 genes for data source: Hapmap. Gene ID: 57835 Time: 12:40:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 145 of 161 genes for data source: Hapmap. Gene ID: 58985 Time: 12:40:09
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 146 of 161 genes for data source: Hapmap. Gene ID: 64333 Time: 12:40:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 147 of 161 genes for data source: Hapmap. Gene ID: 64766 Time: 12:40:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 148 of 161 genes for data source: Hapmap. Gene ID: 81034 Time: 12:40:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 149 of 161 genes for data source: Hapmap. Gene ID: 83877 Time: 12:40:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 150 of 161 genes for data source: Hapmap. Gene ID: 94031 Time: 12:40:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 151 of 161 genes for data source: Hapmap. Gene ID: 116519 Time: 12:40:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 152 of 161 genes for data source: Hapmap. Gene ID: 163702 Time: 12:40:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 153 of 161 genes for data source: Hapmap. Gene ID: 203100 Time: 12:40:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 154 of 161 genes for data source: Hapmap. Gene ID: 221400 Time: 12:40:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 155 of 161 genes for data source: Hapmap. Gene ID: 252995 Time: 12:40:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 156 of 161 genes for data source: Hapmap. Gene ID: 255104 Time: 12:40:25
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 157 of 161 genes for data source: Hapmap. Gene ID: 255738 Time: 12:40:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 158 of 161 genes for data source: Hapmap. Gene ID: 256957 Time: 12:40:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 159 of 161 genes for data source: Hapmap. Gene ID: 259296 Time: 12:40:31
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 160 of 161 genes for data source: Hapmap. Gene ID: 345456 Time: 12:40:32
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 161 of 161 genes for data source: Hapmap. Gene ID: 732058 Time: 12:40:33
     Getting SNP list for gene.
Exception in thread "main" java.lang.Exception: Couldn't find gene with id of '732058'
	at GetSnpsForGene.printSnps(GetSnpsForGene.java:208)
	at GetSnpsForGene.main(GetSnpsForGene.java:82)
     Warning: Getting list of SNPs for 732058 failed.
WARNING: Error processing Gene for data source Hapmap Gene ID: 732058

Number of valid Illumina score files: 1
------------------------------------------------------
Gene Failures for data source: Hapmap
732058
------------------------------------------------------

Processing 1 of 161 genes for data source: Seattle. Gene ID: 19 Time: 12:44:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 2 of 161 genes for data source: Seattle. Gene ID: 133 Time: 12:44:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 3 of 161 genes for data source: Seattle. Gene ID: 186 Time: 12:44:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 4 of 161 genes for data source: Seattle. Gene ID: 239 Time: 12:44:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 5 of 161 genes for data source: Seattle. Gene ID: 337 Time: 12:44:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 6 of 161 genes for data source: Seattle. Gene ID: 338 Time: 12:44:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 7 of 161 genes for data source: Seattle. Gene ID: 345 Time: 12:44:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 8 of 161 genes for data source: Seattle. Gene ID: 348 Time: 12:44:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 9 of 161 genes for data source: Seattle. Gene ID: 462 Time: 12:44:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 10 of 161 genes for data source: Seattle. Gene ID: 551 Time: 12:44:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 11 of 161 genes for data source: Seattle. Gene ID: 558 Time: 12:44:56
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 12 of 161 genes for data source: Seattle. Gene ID: 624 Time: 12:44:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 13 of 161 genes for data source: Seattle. Gene ID: 719 Time: 12:44:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 14 of 161 genes for data source: Seattle. Gene ID: 1071 Time: 12:45:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 15 of 161 genes for data source: Seattle. Gene ID: 1163 Time: 12:45:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 16 of 161 genes for data source: Seattle. Gene ID: 1185 Time: 12:45:02
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 17 of 161 genes for data source: Seattle. Gene ID: 1232 Time: 12:45:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 18 of 161 genes for data source: Seattle. Gene ID: 1296 Time: 12:45:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 19 of 161 genes for data source: Seattle. Gene ID: 1307 Time: 12:45:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 20 of 161 genes for data source: Seattle. Gene ID: 1524 Time: 12:45:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 21 of 161 genes for data source: Seattle. Gene ID: 1584 Time: 12:45:08
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 22 of 161 genes for data source: Seattle. Gene ID: 1649 Time: 12:45:10
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 23 of 161 genes for data source: Seattle. Gene ID: 1786 Time: 12:45:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 24 of 161 genes for data source: Seattle. Gene ID: 1889 Time: 12:45:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 25 of 161 genes for data source: Seattle. Gene ID: 1906 Time: 12:45:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 26 of 161 genes for data source: Seattle. Gene ID: 2147 Time: 12:45:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 27 of 161 genes for data source: Seattle. Gene ID: 2152 Time: 12:45:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 28 of 161 genes for data source: Seattle. Gene ID: 2153 Time: 12:45:17
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 29 of 161 genes for data source: Seattle. Gene ID: 2155 Time: 12:45:20
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 30 of 161 genes for data source: Seattle. Gene ID: 2157 Time: 12:45:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 31 of 161 genes for data source: Seattle. Gene ID: 2159 Time: 12:45:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 32 of 161 genes for data source: Seattle. Gene ID: 2161 Time: 12:45:25
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 33 of 161 genes for data source: Seattle. Gene ID: 2162 Time: 12:45:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 34 of 161 genes for data source: Seattle. Gene ID: 2165 Time: 12:45:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 35 of 161 genes for data source: Seattle. Gene ID: 2169 Time: 12:45:30
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 36 of 161 genes for data source: Seattle. Gene ID: 2170 Time: 12:45:32
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 37 of 161 genes for data source: Seattle. Gene ID: 2244 Time: 12:45:33
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 38 of 161 genes for data source: Seattle. Gene ID: 2593 Time: 12:45:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 39 of 161 genes for data source: Seattle. Gene ID: 2624 Time: 12:45:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 40 of 161 genes for data source: Seattle. Gene ID: 2641 Time: 12:45:37
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 41 of 161 genes for data source: Seattle. Gene ID: 2701 Time: 12:45:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 42 of 161 genes for data source: Seattle. Gene ID: 2744 Time: 12:45:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 43 of 161 genes for data source: Seattle. Gene ID: 2811 Time: 12:45:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 44 of 161 genes for data source: Seattle. Gene ID: 3034 Time: 12:45:42
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 45 of 161 genes for data source: Seattle. Gene ID: 3075 Time: 12:45:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 46 of 161 genes for data source: Seattle. Gene ID: 3082 Time: 12:45:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 47 of 161 genes for data source: Seattle. Gene ID: 3315 Time: 12:45:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 48 of 161 genes for data source: Seattle. Gene ID: 3329 Time: 12:45:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 49 of 161 genes for data source: Seattle. Gene ID: 3336 Time: 12:45:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 50 of 161 genes for data source: Seattle. Gene ID: 3362 Time: 12:45:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 51 of 161 genes for data source: Seattle. Gene ID: 3455 Time: 12:45:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 52 of 161 genes for data source: Seattle. Gene ID: 3459 Time: 12:45:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 53 of 161 genes for data source: Seattle. Gene ID: 3460 Time: 12:45:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 54 of 161 genes for data source: Seattle. Gene ID: 3552 Time: 12:45:56
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 55 of 161 genes for data source: Seattle. Gene ID: 3565 Time: 12:45:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 56 of 161 genes for data source: Seattle. Gene ID: 3578 Time: 12:45:59
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 57 of 161 genes for data source: Seattle. Gene ID: 3596 Time: 12:46:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 58 of 161 genes for data source: Seattle. Gene ID: 3601 Time: 12:46:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 59 of 161 genes for data source: Seattle. Gene ID: 3606 Time: 12:46:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 60 of 161 genes for data source: Seattle. Gene ID: 3690 Time: 12:46:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 61 of 161 genes for data source: Seattle. Gene ID: 3952 Time: 12:46:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 62 of 161 genes for data source: Seattle. Gene ID: 3990 Time: 12:46:09
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 63 of 161 genes for data source: Seattle. Gene ID: 4023 Time: 12:46:10
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 64 of 161 genes for data source: Seattle. Gene ID: 4025 Time: 12:46:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 65 of 161 genes for data source: Seattle. Gene ID: 4036 Time: 12:46:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 66 of 161 genes for data source: Seattle. Gene ID: 4048 Time: 12:46:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 67 of 161 genes for data source: Seattle. Gene ID: 4049 Time: 12:46:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 68 of 161 genes for data source: Seattle. Gene ID: 4141 Time: 12:46:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 69 of 161 genes for data source: Seattle. Gene ID: 4254 Time: 12:46:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 70 of 161 genes for data source: Seattle. Gene ID: 4312 Time: 12:46:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 71 of 161 genes for data source: Seattle. Gene ID: 4313 Time: 12:46:20
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 72 of 161 genes for data source: Seattle. Gene ID: 4353 Time: 12:46:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 73 of 161 genes for data source: Seattle. Gene ID: 4524 Time: 12:46:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 74 of 161 genes for data source: Seattle. Gene ID: 4548 Time: 12:46:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 75 of 161 genes for data source: Seattle. Gene ID: 4681 Time: 12:46:25
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 76 of 161 genes for data source: Seattle. Gene ID: 4878 Time: 12:46:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 77 of 161 genes for data source: Seattle. Gene ID: 4879 Time: 12:46:27
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 78 of 161 genes for data source: Seattle. Gene ID: 5054 Time: 12:46:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 79 of 161 genes for data source: Seattle. Gene ID: 5069 Time: 12:46:30
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 80 of 161 genes for data source: Seattle. Gene ID: 5196 Time: 12:46:31
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 81 of 161 genes for data source: Seattle. Gene ID: 5329 Time: 12:46:32
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 82 of 161 genes for data source: Seattle. Gene ID: 5340 Time: 12:46:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 83 of 161 genes for data source: Seattle. Gene ID: 5444 Time: 12:46:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 84 of 161 genes for data source: Seattle. Gene ID: 5445 Time: 12:46:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 85 of 161 genes for data source: Seattle. Gene ID: 5446 Time: 12:46:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 86 of 161 genes for data source: Seattle. Gene ID: 5473 Time: 12:46:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 87 of 161 genes for data source: Seattle. Gene ID: 5654 Time: 12:46:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 88 of 161 genes for data source: Seattle. Gene ID: 5687 Time: 12:46:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 89 of 161 genes for data source: Seattle. Gene ID: 5724 Time: 12:46:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 90 of 161 genes for data source: Seattle. Gene ID: 5742 Time: 12:46:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 91 of 161 genes for data source: Seattle. Gene ID: 5901 Time: 12:46:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 92 of 161 genes for data source: Seattle. Gene ID: 6005 Time: 12:46:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 93 of 161 genes for data source: Seattle. Gene ID: 6098 Time: 12:46:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 94 of 161 genes for data source: Seattle. Gene ID: 6288 Time: 12:46:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 95 of 161 genes for data source: Seattle. Gene ID: 6320 Time: 12:46:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 96 of 161 genes for data source: Seattle. Gene ID: 6337 Time: 12:46:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 97 of 161 genes for data source: Seattle. Gene ID: 6347 Time: 12:46:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 98 of 161 genes for data source: Seattle. Gene ID: 6352 Time: 12:46:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 99 of 161 genes for data source: Seattle. Gene ID: 6403 Time: 12:46:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 100 of 161 genes for data source: Seattle. Gene ID: 6464 Time: 12:47:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 101 of 161 genes for data source: Seattle. Gene ID: 6649 Time: 12:47:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 102 of 161 genes for data source: Seattle. Gene ID: 6696 Time: 12:47:02
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 103 of 161 genes for data source: Seattle. Gene ID: 6754 Time: 12:47:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 104 of 161 genes for data source: Seattle. Gene ID: 6772 Time: 12:47:04
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 105 of 161 genes for data source: Seattle. Gene ID: 7035 Time: 12:47:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 106 of 161 genes for data source: Seattle. Gene ID: 7056 Time: 12:47:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 107 of 161 genes for data source: Seattle. Gene ID: 7060 Time: 12:47:09
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 108 of 161 genes for data source: Seattle. Gene ID: 7076 Time: 12:47:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 109 of 161 genes for data source: Seattle. Gene ID: 7099 Time: 12:47:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 110 of 161 genes for data source: Seattle. Gene ID: 7124 Time: 12:47:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 111 of 161 genes for data source: Seattle. Gene ID: 7132 Time: 12:47:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 112 of 161 genes for data source: Seattle. Gene ID: 7133 Time: 12:47:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 113 of 161 genes for data source: Seattle. Gene ID: 7292 Time: 12:47:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 114 of 161 genes for data source: Seattle. Gene ID: 7391 Time: 12:47:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 115 of 161 genes for data source: Seattle. Gene ID: 7450 Time: 12:47:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 116 of 161 genes for data source: Seattle. Gene ID: 7941 Time: 12:47:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 117 of 161 genes for data source: Seattle. Gene ID: 8402 Time: 12:47:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 118 of 161 genes for data source: Seattle. Gene ID: 8516 Time: 12:47:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 119 of 161 genes for data source: Seattle. Gene ID: 8673 Time: 12:47:27
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 120 of 161 genes for data source: Seattle. Gene ID: 8743 Time: 12:47:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 121 of 161 genes for data source: Seattle. Gene ID: 8882 Time: 12:47:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 122 of 161 genes for data source: Seattle. Gene ID: 9370 Time: 12:47:30
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 123 of 161 genes for data source: Seattle. Gene ID: 10082 Time: 12:47:31
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 124 of 161 genes for data source: Seattle. Gene ID: 10498 Time: 12:47:33
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 125 of 161 genes for data source: Seattle. Gene ID: 10544 Time: 12:47:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 126 of 161 genes for data source: Seattle. Gene ID: 10791 Time: 12:47:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 127 of 161 genes for data source: Seattle. Gene ID: 10875 Time: 12:47:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 128 of 161 genes for data source: Seattle. Gene ID: 11100 Time: 12:47:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 129 of 161 genes for data source: Seattle. Gene ID: 22937 Time: 12:47:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 130 of 161 genes for data source: Seattle. Gene ID: 23460 Time: 12:47:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 131 of 161 genes for data source: Seattle. Gene ID: 25879 Time: 12:47:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 132 of 161 genes for data source: Seattle. Gene ID: 25930 Time: 12:47:42
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 133 of 161 genes for data source: Seattle. Gene ID: 25977 Time: 12:47:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 134 of 161 genes for data source: Seattle. Gene ID: 26119 Time: 12:47:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 135 of 161 genes for data source: Seattle. Gene ID: 30814 Time: 12:47:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 136 of 161 genes for data source: Seattle. Gene ID: 50848 Time: 12:47:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 137 of 161 genes for data source: Seattle. Gene ID: 51538 Time: 12:47:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 138 of 161 genes for data source: Seattle. Gene ID: 51738 Time: 12:47:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 139 of 161 genes for data source: Seattle. Gene ID: 54936 Time: 12:47:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 140 of 161 genes for data source: Seattle. Gene ID: 54947 Time: 12:47:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 141 of 161 genes for data source: Seattle. Gene ID: 56158 Time: 12:47:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 142 of 161 genes for data source: Seattle. Gene ID: 56729 Time: 12:47:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 143 of 161 genes for data source: Seattle. Gene ID: 57085 Time: 12:47:56
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 144 of 161 genes for data source: Seattle. Gene ID: 57835 Time: 12:47:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 145 of 161 genes for data source: Seattle. Gene ID: 58985 Time: 12:47:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 146 of 161 genes for data source: Seattle. Gene ID: 64333 Time: 12:48:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 147 of 161 genes for data source: Seattle. Gene ID: 64766 Time: 12:48:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 148 of 161 genes for data source: Seattle. Gene ID: 81034 Time: 12:48:02
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 149 of 161 genes for data source: Seattle. Gene ID: 83877 Time: 12:48:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 150 of 161 genes for data source: Seattle. Gene ID: 94031 Time: 12:48:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 151 of 161 genes for data source: Seattle. Gene ID: 116519 Time: 12:48:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 152 of 161 genes for data source: Seattle. Gene ID: 163702 Time: 12:48:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 153 of 161 genes for data source: Seattle. Gene ID: 203100 Time: 12:48:08
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 154 of 161 genes for data source: Seattle. Gene ID: 221400 Time: 12:48:10
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 155 of 161 genes for data source: Seattle. Gene ID: 252995 Time: 12:48:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 156 of 161 genes for data source: Seattle. Gene ID: 255104 Time: 12:48:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 157 of 161 genes for data source: Seattle. Gene ID: 255738 Time: 12:48:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 158 of 161 genes for data source: Seattle. Gene ID: 256957 Time: 12:48:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 159 of 161 genes for data source: Seattle. Gene ID: 259296 Time: 12:48:17
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 160 of 161 genes for data source: Seattle. Gene ID: 345456 Time: 12:48:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 161 of 161 genes for data source: Seattle. Gene ID: 732058 Time: 12:48:19
     Getting SNP list for gene.
Exception in thread "main" java.lang.Exception: Couldn't find gene with id of '732058'
	at GetSnpsForGene.printSnps(GetSnpsForGene.java:208)
	at GetSnpsForGene.main(GetSnpsForGene.java:82)
     Warning: Getting list of SNPs for 732058 failed.
WARNING: Error processing Gene for data source Seattle Gene ID: 732058

Number of valid Illumina score files: 1
------------------------------------------------------
Gene Failures for data source: Seattle
732058
------------------------------------------------------

Processing 1 of 161 genes for data source: Niehs. Gene ID: 19 Time: 12:48:56
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 2 of 161 genes for data source: Niehs. Gene ID: 133 Time: 12:48:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 3 of 161 genes for data source: Niehs. Gene ID: 186 Time: 12:48:59
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 4 of 161 genes for data source: Niehs. Gene ID: 239 Time: 12:49:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 5 of 161 genes for data source: Niehs. Gene ID: 337 Time: 12:49:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 6 of 161 genes for data source: Niehs. Gene ID: 338 Time: 12:49:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 7 of 161 genes for data source: Niehs. Gene ID: 345 Time: 12:49:04
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 8 of 161 genes for data source: Niehs. Gene ID: 348 Time: 12:49:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 9 of 161 genes for data source: Niehs. Gene ID: 462 Time: 12:49:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 10 of 161 genes for data source: Niehs. Gene ID: 551 Time: 12:49:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 11 of 161 genes for data source: Niehs. Gene ID: 558 Time: 12:49:09
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 12 of 161 genes for data source: Niehs. Gene ID: 624 Time: 12:49:10
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 13 of 161 genes for data source: Niehs. Gene ID: 719 Time: 12:49:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 14 of 161 genes for data source: Niehs. Gene ID: 1071 Time: 12:49:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 15 of 161 genes for data source: Niehs. Gene ID: 1163 Time: 12:49:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 16 of 161 genes for data source: Niehs. Gene ID: 1185 Time: 12:49:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 17 of 161 genes for data source: Niehs. Gene ID: 1232 Time: 12:49:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 18 of 161 genes for data source: Niehs. Gene ID: 1296 Time: 12:49:17
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 19 of 161 genes for data source: Niehs. Gene ID: 1307 Time: 12:49:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 20 of 161 genes for data source: Niehs. Gene ID: 1524 Time: 12:49:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 21 of 161 genes for data source: Niehs. Gene ID: 1584 Time: 12:49:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 22 of 161 genes for data source: Niehs. Gene ID: 1649 Time: 12:49:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 23 of 161 genes for data source: Niehs. Gene ID: 1786 Time: 12:49:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 24 of 161 genes for data source: Niehs. Gene ID: 1889 Time: 12:49:25
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 25 of 161 genes for data source: Niehs. Gene ID: 1906 Time: 12:49:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 26 of 161 genes for data source: Niehs. Gene ID: 2147 Time: 12:49:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 27 of 161 genes for data source: Niehs. Gene ID: 2152 Time: 12:49:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 28 of 161 genes for data source: Niehs. Gene ID: 2153 Time: 12:49:30
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 29 of 161 genes for data source: Niehs. Gene ID: 2155 Time: 12:49:32
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 30 of 161 genes for data source: Niehs. Gene ID: 2157 Time: 12:49:33
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 31 of 161 genes for data source: Niehs. Gene ID: 2159 Time: 12:49:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 32 of 161 genes for data source: Niehs. Gene ID: 2161 Time: 12:49:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 33 of 161 genes for data source: Niehs. Gene ID: 2162 Time: 12:49:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 34 of 161 genes for data source: Niehs. Gene ID: 2165 Time: 12:49:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 35 of 161 genes for data source: Niehs. Gene ID: 2169 Time: 12:49:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 36 of 161 genes for data source: Niehs. Gene ID: 2170 Time: 12:49:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 37 of 161 genes for data source: Niehs. Gene ID: 2244 Time: 12:49:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 38 of 161 genes for data source: Niehs. Gene ID: 2593 Time: 12:49:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 39 of 161 genes for data source: Niehs. Gene ID: 2624 Time: 12:49:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 40 of 161 genes for data source: Niehs. Gene ID: 2641 Time: 12:49:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 41 of 161 genes for data source: Niehs. Gene ID: 2701 Time: 12:49:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 42 of 161 genes for data source: Niehs. Gene ID: 2744 Time: 12:49:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 43 of 161 genes for data source: Niehs. Gene ID: 2811 Time: 12:49:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 44 of 161 genes for data source: Niehs. Gene ID: 3034 Time: 12:49:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 45 of 161 genes for data source: Niehs. Gene ID: 3075 Time: 12:49:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 46 of 161 genes for data source: Niehs. Gene ID: 3082 Time: 12:49:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 47 of 161 genes for data source: Niehs. Gene ID: 3315 Time: 12:49:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 48 of 161 genes for data source: Niehs. Gene ID: 3329 Time: 12:49:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 49 of 161 genes for data source: Niehs. Gene ID: 3336 Time: 12:49:56
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 50 of 161 genes for data source: Niehs. Gene ID: 3362 Time: 12:49:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 51 of 161 genes for data source: Niehs. Gene ID: 3455 Time: 12:49:59
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 52 of 161 genes for data source: Niehs. Gene ID: 3459 Time: 12:50:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 53 of 161 genes for data source: Niehs. Gene ID: 3460 Time: 12:50:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 54 of 161 genes for data source: Niehs. Gene ID: 3552 Time: 12:50:02
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 55 of 161 genes for data source: Niehs. Gene ID: 3565 Time: 12:50:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 56 of 161 genes for data source: Niehs. Gene ID: 3578 Time: 12:50:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 57 of 161 genes for data source: Niehs. Gene ID: 3596 Time: 12:50:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 58 of 161 genes for data source: Niehs. Gene ID: 3601 Time: 12:50:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 59 of 161 genes for data source: Niehs. Gene ID: 3606 Time: 12:50:08
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 60 of 161 genes for data source: Niehs. Gene ID: 3690 Time: 12:50:10
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 61 of 161 genes for data source: Niehs. Gene ID: 3952 Time: 12:50:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 62 of 161 genes for data source: Niehs. Gene ID: 3990 Time: 12:50:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 63 of 161 genes for data source: Niehs. Gene ID: 4023 Time: 12:50:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 64 of 161 genes for data source: Niehs. Gene ID: 4025 Time: 12:50:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 65 of 161 genes for data source: Niehs. Gene ID: 4036 Time: 12:50:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 66 of 161 genes for data source: Niehs. Gene ID: 4048 Time: 12:50:17
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 67 of 161 genes for data source: Niehs. Gene ID: 4049 Time: 12:50:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 68 of 161 genes for data source: Niehs. Gene ID: 4141 Time: 12:50:20
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 69 of 161 genes for data source: Niehs. Gene ID: 4254 Time: 12:50:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 70 of 161 genes for data source: Niehs. Gene ID: 4312 Time: 12:50:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 71 of 161 genes for data source: Niehs. Gene ID: 4313 Time: 12:50:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 72 of 161 genes for data source: Niehs. Gene ID: 4353 Time: 12:50:25
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 73 of 161 genes for data source: Niehs. Gene ID: 4524 Time: 12:50:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 74 of 161 genes for data source: Niehs. Gene ID: 4548 Time: 12:50:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 75 of 161 genes for data source: Niehs. Gene ID: 4681 Time: 12:50:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 76 of 161 genes for data source: Niehs. Gene ID: 4878 Time: 12:50:30
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 77 of 161 genes for data source: Niehs. Gene ID: 4879 Time: 12:50:31
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 78 of 161 genes for data source: Niehs. Gene ID: 5054 Time: 12:50:32
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 79 of 161 genes for data source: Niehs. Gene ID: 5069 Time: 12:50:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 80 of 161 genes for data source: Niehs. Gene ID: 5196 Time: 12:50:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 81 of 161 genes for data source: Niehs. Gene ID: 5329 Time: 12:50:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 82 of 161 genes for data source: Niehs. Gene ID: 5340 Time: 12:50:37
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 83 of 161 genes for data source: Niehs. Gene ID: 5444 Time: 12:50:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 84 of 161 genes for data source: Niehs. Gene ID: 5445 Time: 12:50:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 85 of 161 genes for data source: Niehs. Gene ID: 5446 Time: 12:50:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 86 of 161 genes for data source: Niehs. Gene ID: 5473 Time: 12:50:42
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 87 of 161 genes for data source: Niehs. Gene ID: 5654 Time: 12:50:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 88 of 161 genes for data source: Niehs. Gene ID: 5687 Time: 12:50:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 89 of 161 genes for data source: Niehs. Gene ID: 5724 Time: 12:50:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 90 of 161 genes for data source: Niehs. Gene ID: 5742 Time: 12:50:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 91 of 161 genes for data source: Niehs. Gene ID: 5901 Time: 12:50:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 92 of 161 genes for data source: Niehs. Gene ID: 6005 Time: 12:50:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 93 of 161 genes for data source: Niehs. Gene ID: 6098 Time: 12:50:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 94 of 161 genes for data source: Niehs. Gene ID: 6288 Time: 12:50:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 95 of 161 genes for data source: Niehs. Gene ID: 6320 Time: 12:50:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 96 of 161 genes for data source: Niehs. Gene ID: 6337 Time: 12:50:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 97 of 161 genes for data source: Niehs. Gene ID: 6347 Time: 12:50:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 98 of 161 genes for data source: Niehs. Gene ID: 6352 Time: 12:50:56
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 99 of 161 genes for data source: Niehs. Gene ID: 6403 Time: 12:50:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 100 of 161 genes for data source: Niehs. Gene ID: 6464 Time: 12:50:59
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 101 of 161 genes for data source: Niehs. Gene ID: 6649 Time: 12:51:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 102 of 161 genes for data source: Niehs. Gene ID: 6696 Time: 12:51:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 103 of 161 genes for data source: Niehs. Gene ID: 6754 Time: 12:51:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 104 of 161 genes for data source: Niehs. Gene ID: 6772 Time: 12:51:04
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 105 of 161 genes for data source: Niehs. Gene ID: 7035 Time: 12:51:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 106 of 161 genes for data source: Niehs. Gene ID: 7056 Time: 12:51:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 107 of 161 genes for data source: Niehs. Gene ID: 7060 Time: 12:51:08
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 108 of 161 genes for data source: Niehs. Gene ID: 7076 Time: 12:51:09
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 109 of 161 genes for data source: Niehs. Gene ID: 7099 Time: 12:51:10
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 110 of 161 genes for data source: Niehs. Gene ID: 7124 Time: 12:51:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 111 of 161 genes for data source: Niehs. Gene ID: 7132 Time: 12:51:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 112 of 161 genes for data source: Niehs. Gene ID: 7133 Time: 12:51:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 113 of 161 genes for data source: Niehs. Gene ID: 7292 Time: 12:51:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 114 of 161 genes for data source: Niehs. Gene ID: 7391 Time: 12:51:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 115 of 161 genes for data source: Niehs. Gene ID: 7450 Time: 12:51:17
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 116 of 161 genes for data source: Niehs. Gene ID: 7941 Time: 12:51:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 117 of 161 genes for data source: Niehs. Gene ID: 8402 Time: 12:51:20
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 118 of 161 genes for data source: Niehs. Gene ID: 8516 Time: 12:51:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 119 of 161 genes for data source: Niehs. Gene ID: 8673 Time: 12:51:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 120 of 161 genes for data source: Niehs. Gene ID: 8743 Time: 12:51:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 121 of 161 genes for data source: Niehs. Gene ID: 8882 Time: 12:51:25
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 122 of 161 genes for data source: Niehs. Gene ID: 9370 Time: 12:51:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 123 of 161 genes for data source: Niehs. Gene ID: 10082 Time: 12:51:27
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 124 of 161 genes for data source: Niehs. Gene ID: 10498 Time: 12:51:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 125 of 161 genes for data source: Niehs. Gene ID: 10544 Time: 12:51:30
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 126 of 161 genes for data source: Niehs. Gene ID: 10791 Time: 12:51:31
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 127 of 161 genes for data source: Niehs. Gene ID: 10875 Time: 12:51:32
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 128 of 161 genes for data source: Niehs. Gene ID: 11100 Time: 12:51:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 129 of 161 genes for data source: Niehs. Gene ID: 22937 Time: 12:51:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 130 of 161 genes for data source: Niehs. Gene ID: 23460 Time: 12:51:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 131 of 161 genes for data source: Niehs. Gene ID: 25879 Time: 12:51:37
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 132 of 161 genes for data source: Niehs. Gene ID: 25930 Time: 12:51:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 133 of 161 genes for data source: Niehs. Gene ID: 25977 Time: 12:51:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 134 of 161 genes for data source: Niehs. Gene ID: 26119 Time: 12:51:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 135 of 161 genes for data source: Niehs. Gene ID: 30814 Time: 12:51:42
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 136 of 161 genes for data source: Niehs. Gene ID: 50848 Time: 12:51:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 137 of 161 genes for data source: Niehs. Gene ID: 51538 Time: 12:51:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 138 of 161 genes for data source: Niehs. Gene ID: 51738 Time: 12:51:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 139 of 161 genes for data source: Niehs. Gene ID: 54936 Time: 12:51:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 140 of 161 genes for data source: Niehs. Gene ID: 54947 Time: 12:51:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 141 of 161 genes for data source: Niehs. Gene ID: 56158 Time: 12:51:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 142 of 161 genes for data source: Niehs. Gene ID: 56729 Time: 12:51:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 143 of 161 genes for data source: Niehs. Gene ID: 57085 Time: 12:51:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 144 of 161 genes for data source: Niehs. Gene ID: 57835 Time: 12:51:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 145 of 161 genes for data source: Niehs. Gene ID: 58985 Time: 12:51:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 146 of 161 genes for data source: Niehs. Gene ID: 64333 Time: 12:51:56
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 147 of 161 genes for data source: Niehs. Gene ID: 64766 Time: 12:51:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 148 of 161 genes for data source: Niehs. Gene ID: 81034 Time: 12:51:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 149 of 161 genes for data source: Niehs. Gene ID: 83877 Time: 12:52:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 150 of 161 genes for data source: Niehs. Gene ID: 94031 Time: 12:52:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 151 of 161 genes for data source: Niehs. Gene ID: 116519 Time: 12:52:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 152 of 161 genes for data source: Niehs. Gene ID: 163702 Time: 12:52:04
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 153 of 161 genes for data source: Niehs. Gene ID: 203100 Time: 12:52:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 154 of 161 genes for data source: Niehs. Gene ID: 221400 Time: 12:52:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 155 of 161 genes for data source: Niehs. Gene ID: 252995 Time: 12:52:08
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 156 of 161 genes for data source: Niehs. Gene ID: 255104 Time: 12:52:09
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 157 of 161 genes for data source: Niehs. Gene ID: 255738 Time: 12:52:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 158 of 161 genes for data source: Niehs. Gene ID: 256957 Time: 12:52:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 159 of 161 genes for data source: Niehs. Gene ID: 259296 Time: 12:52:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 160 of 161 genes for data source: Niehs. Gene ID: 345456 Time: 12:52:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 161 of 161 genes for data source: Niehs. Gene ID: 732058 Time: 12:52:16
     Getting SNP list for gene.
Exception in thread "main" java.lang.Exception: Couldn't find gene with id of '732058'
	at GetSnpsForGene.printSnps(GetSnpsForGene.java:208)
	at GetSnpsForGene.main(GetSnpsForGene.java:82)
     Warning: Getting list of SNPs for 732058 failed.
WARNING: Error processing Gene for data source Niehs Gene ID: 732058

Number of valid Illumina score files: 1
------------------------------------------------------
Gene Failures for data source: Niehs
732058
------------------------------------------------------

Summary report snps_all_sources.txt written to: /home/m037385/snppicker_paper/SNPApp_EUR_0.90_0.05_1228_1231
Summary report gene_snps_all_sources.txt written to: /home/m037385/snppicker_paper/SNPApp_EUR_0.90_0.05_1228_1231

------------------------------------------------------
Failure Summary: The following gene IDs failed during processing.

 Gene Failures for Hapmap : 732058 
 Gene Failures for Seattle : 732058 
 Gene Failures for Niehs : 732058

------------------------------------------------------
