Fri Dec 28 12:32:53 CST 2007
Working Directory full path value: /home/m037385/snppicker_paper
Logging to: /home/m037385/snppicker_paper/log
Install Directory value: /home/m026366/bin/SNPApp

Running bin_all_genes.csh with following parameters: 
Bin Genes Parameters:
Gene Input File:         kullo_genes2.txt
Data Source:             Hapmap,Seattle,niehs
Ethnicity:               AFR
Base Pair Upstream:      5000
Base Pair Downstream:    5000
R Squared Value:         0.90
Minor Allele Frequency:  0.05
Illumina Score Directory:  .
Database Parameters:
Sybase Home Path:  /opt/sybase-12.5
Sybase bin Path:  /opt/sybase-12.5/OCS-12_5/bin
Java bin Path:  /usr/local/bin
Sybase Interface Server Name:  SNP_SELECT
Sybase database Name:  bc_a_snpselect
Sybase database User:  bc_a_snpselect_reader
Sybase Database Host:  lbidb.mayo.edu
Sybase Database Port:  4100
Sybase Database Temporary Table:  snpsel_1232_882

Now logging to: /home/m037385/snppicker_paper/SNPApp_AFR_0.90_0.05_1228_1232/log
Creating working directories. 12:32:53
Completed creation of working directories. 12:32:54

Processing 1 of 161 genes for data source: Hapmap. Gene ID: 19 Time: 12:32:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 2 of 161 genes for data source: Hapmap. Gene ID: 133 Time: 12:33:02
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 3 of 161 genes for data source: Hapmap. Gene ID: 186 Time: 12:33:04
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 4 of 161 genes for data source: Hapmap. Gene ID: 239 Time: 12:33:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 5 of 161 genes for data source: Hapmap. Gene ID: 337 Time: 12:33:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 6 of 161 genes for data source: Hapmap. Gene ID: 338 Time: 12:33:08
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 7 of 161 genes for data source: Hapmap. Gene ID: 345 Time: 12:33:10
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 8 of 161 genes for data source: Hapmap. Gene ID: 348 Time: 12:33:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 9 of 161 genes for data source: Hapmap. Gene ID: 462 Time: 12:33:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 10 of 161 genes for data source: Hapmap. Gene ID: 551 Time: 12:33:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 11 of 161 genes for data source: Hapmap. Gene ID: 558 Time: 12:33:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 12 of 161 genes for data source: Hapmap. Gene ID: 624 Time: 12:33:17
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 13 of 161 genes for data source: Hapmap. Gene ID: 719 Time: 12:33:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 14 of 161 genes for data source: Hapmap. Gene ID: 1071 Time: 12:33:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 15 of 161 genes for data source: Hapmap. Gene ID: 1163 Time: 12:33:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 16 of 161 genes for data source: Hapmap. Gene ID: 1185 Time: 12:33:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 17 of 161 genes for data source: Hapmap. Gene ID: 1232 Time: 12:33:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 18 of 161 genes for data source: Hapmap. Gene ID: 1296 Time: 12:33:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 19 of 161 genes for data source: Hapmap. Gene ID: 1307 Time: 12:33:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 20 of 161 genes for data source: Hapmap. Gene ID: 1524 Time: 12:33:32
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 21 of 161 genes for data source: Hapmap. Gene ID: 1584 Time: 12:33:33
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 22 of 161 genes for data source: Hapmap. Gene ID: 1649 Time: 12:33:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 23 of 161 genes for data source: Hapmap. Gene ID: 1786 Time: 12:33:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 24 of 161 genes for data source: Hapmap. Gene ID: 1889 Time: 12:33:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 25 of 161 genes for data source: Hapmap. Gene ID: 1906 Time: 12:33:42
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 26 of 161 genes for data source: Hapmap. Gene ID: 2147 Time: 12:33:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 27 of 161 genes for data source: Hapmap. Gene ID: 2152 Time: 12:33:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 28 of 161 genes for data source: Hapmap. Gene ID: 2153 Time: 12:33:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 29 of 161 genes for data source: Hapmap. Gene ID: 2155 Time: 12:33:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 30 of 161 genes for data source: Hapmap. Gene ID: 2157 Time: 12:33:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 31 of 161 genes for data source: Hapmap. Gene ID: 2159 Time: 12:33:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 32 of 161 genes for data source: Hapmap. Gene ID: 2161 Time: 12:33:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 33 of 161 genes for data source: Hapmap. Gene ID: 2162 Time: 12:33:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 34 of 161 genes for data source: Hapmap. Gene ID: 2165 Time: 12:34:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 35 of 161 genes for data source: Hapmap. Gene ID: 2169 Time: 12:34:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 36 of 161 genes for data source: Hapmap. Gene ID: 2170 Time: 12:34:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 37 of 161 genes for data source: Hapmap. Gene ID: 2244 Time: 12:34:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 38 of 161 genes for data source: Hapmap. Gene ID: 2593 Time: 12:34:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 39 of 161 genes for data source: Hapmap. Gene ID: 2624 Time: 12:34:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 40 of 161 genes for data source: Hapmap. Gene ID: 2641 Time: 12:34:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 41 of 161 genes for data source: Hapmap. Gene ID: 2701 Time: 12:34:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 42 of 161 genes for data source: Hapmap. Gene ID: 2744 Time: 12:34:25
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 43 of 161 genes for data source: Hapmap. Gene ID: 2811 Time: 12:34:27
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 44 of 161 genes for data source: Hapmap. Gene ID: 3034 Time: 12:34:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 45 of 161 genes for data source: Hapmap. Gene ID: 3075 Time: 12:34:30
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 46 of 161 genes for data source: Hapmap. Gene ID: 3082 Time: 12:34:32
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 47 of 161 genes for data source: Hapmap. Gene ID: 3315 Time: 12:34:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 48 of 161 genes for data source: Hapmap. Gene ID: 3329 Time: 12:34:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 49 of 161 genes for data source: Hapmap. Gene ID: 3336 Time: 12:34:37
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 50 of 161 genes for data source: Hapmap. Gene ID: 3362 Time: 12:34:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 51 of 161 genes for data source: Hapmap. Gene ID: 3455 Time: 12:34:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 52 of 161 genes for data source: Hapmap. Gene ID: 3459 Time: 12:34:42
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 53 of 161 genes for data source: Hapmap. Gene ID: 3460 Time: 12:34:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 54 of 161 genes for data source: Hapmap. Gene ID: 3552 Time: 12:34:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 55 of 161 genes for data source: Hapmap. Gene ID: 3565 Time: 12:34:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 56 of 161 genes for data source: Hapmap. Gene ID: 3578 Time: 12:34:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 57 of 161 genes for data source: Hapmap. Gene ID: 3596 Time: 12:34:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 58 of 161 genes for data source: Hapmap. Gene ID: 3601 Time: 12:34:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 59 of 161 genes for data source: Hapmap. Gene ID: 3606 Time: 12:34:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 60 of 161 genes for data source: Hapmap. Gene ID: 3690 Time: 12:34:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 61 of 161 genes for data source: Hapmap. Gene ID: 3952 Time: 12:34:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 62 of 161 genes for data source: Hapmap. Gene ID: 3990 Time: 12:34:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 63 of 161 genes for data source: Hapmap. Gene ID: 4023 Time: 12:35:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 64 of 161 genes for data source: Hapmap. Gene ID: 4025 Time: 12:35:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 65 of 161 genes for data source: Hapmap. Gene ID: 4036 Time: 12:35:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 66 of 161 genes for data source: Hapmap. Gene ID: 4048 Time: 12:35:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 67 of 161 genes for data source: Hapmap. Gene ID: 4049 Time: 12:35:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 68 of 161 genes for data source: Hapmap. Gene ID: 4141 Time: 12:35:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 69 of 161 genes for data source: Hapmap. Gene ID: 4254 Time: 12:35:31
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 70 of 161 genes for data source: Hapmap. Gene ID: 4312 Time: 12:35:33
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 71 of 161 genes for data source: Hapmap. Gene ID: 4313 Time: 12:35:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 72 of 161 genes for data source: Hapmap. Gene ID: 4353 Time: 12:35:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 73 of 161 genes for data source: Hapmap. Gene ID: 4524 Time: 12:35:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 74 of 161 genes for data source: Hapmap. Gene ID: 4548 Time: 12:35:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 75 of 161 genes for data source: Hapmap. Gene ID: 4681 Time: 12:35:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 76 of 161 genes for data source: Hapmap. Gene ID: 4878 Time: 12:35:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 77 of 161 genes for data source: Hapmap. Gene ID: 4879 Time: 12:35:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 78 of 161 genes for data source: Hapmap. Gene ID: 5054 Time: 12:35:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 79 of 161 genes for data source: Hapmap. Gene ID: 5069 Time: 12:35:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 80 of 161 genes for data source: Hapmap. Gene ID: 5196 Time: 12:35:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 81 of 161 genes for data source: Hapmap. Gene ID: 5329 Time: 12:35:59
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 82 of 161 genes for data source: Hapmap. Gene ID: 5340 Time: 12:36:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 83 of 161 genes for data source: Hapmap. Gene ID: 5444 Time: 12:36:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 84 of 161 genes for data source: Hapmap. Gene ID: 5445 Time: 12:36:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 85 of 161 genes for data source: Hapmap. Gene ID: 5446 Time: 12:36:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 86 of 161 genes for data source: Hapmap. Gene ID: 5473 Time: 12:36:09
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 87 of 161 genes for data source: Hapmap. Gene ID: 5654 Time: 12:36:10
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 88 of 161 genes for data source: Hapmap. Gene ID: 5687 Time: 12:36:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 89 of 161 genes for data source: Hapmap. Gene ID: 5724 Time: 12:36:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 90 of 161 genes for data source: Hapmap. Gene ID: 5742 Time: 12:36:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 91 of 161 genes for data source: Hapmap. Gene ID: 5901 Time: 12:36:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 92 of 161 genes for data source: Hapmap. Gene ID: 6005 Time: 12:36:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 93 of 161 genes for data source: Hapmap. Gene ID: 6098 Time: 12:36:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 94 of 161 genes for data source: Hapmap. Gene ID: 6288 Time: 12:36:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 95 of 161 genes for data source: Hapmap. Gene ID: 6320 Time: 12:36:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 96 of 161 genes for data source: Hapmap. Gene ID: 6337 Time: 12:36:27
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 97 of 161 genes for data source: Hapmap. Gene ID: 6347 Time: 12:36:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 98 of 161 genes for data source: Hapmap. Gene ID: 6352 Time: 12:36:30
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 99 of 161 genes for data source: Hapmap. Gene ID: 6403 Time: 12:36:31
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 100 of 161 genes for data source: Hapmap. Gene ID: 6464 Time: 12:36:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 101 of 161 genes for data source: Hapmap. Gene ID: 6649 Time: 12:36:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 102 of 161 genes for data source: Hapmap. Gene ID: 6696 Time: 12:36:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 103 of 161 genes for data source: Hapmap. Gene ID: 6754 Time: 12:36:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 104 of 161 genes for data source: Hapmap. Gene ID: 6772 Time: 12:36:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 105 of 161 genes for data source: Hapmap. Gene ID: 7035 Time: 12:36:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 106 of 161 genes for data source: Hapmap. Gene ID: 7056 Time: 12:36:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 107 of 161 genes for data source: Hapmap. Gene ID: 7060 Time: 12:36:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 108 of 161 genes for data source: Hapmap. Gene ID: 7076 Time: 12:36:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 109 of 161 genes for data source: Hapmap. Gene ID: 7099 Time: 12:36:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 110 of 161 genes for data source: Hapmap. Gene ID: 7124 Time: 12:36:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 111 of 161 genes for data source: Hapmap. Gene ID: 7132 Time: 12:36:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 112 of 161 genes for data source: Hapmap. Gene ID: 7133 Time: 12:36:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 113 of 161 genes for data source: Hapmap. Gene ID: 7292 Time: 12:36:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 114 of 161 genes for data source: Hapmap. Gene ID: 7391 Time: 12:36:56
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 115 of 161 genes for data source: Hapmap. Gene ID: 7450 Time: 12:36:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 116 of 161 genes for data source: Hapmap. Gene ID: 7941 Time: 12:37:04
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 117 of 161 genes for data source: Hapmap. Gene ID: 8402 Time: 12:37:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 118 of 161 genes for data source: Hapmap. Gene ID: 8516 Time: 12:37:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 119 of 161 genes for data source: Hapmap. Gene ID: 8673 Time: 12:37:17
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 120 of 161 genes for data source: Hapmap. Gene ID: 8743 Time: 12:37:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 121 of 161 genes for data source: Hapmap. Gene ID: 8882 Time: 12:37:20
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 122 of 161 genes for data source: Hapmap. Gene ID: 9370 Time: 12:37:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 123 of 161 genes for data source: Hapmap. Gene ID: 10082 Time: 12:37:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 124 of 161 genes for data source: Hapmap. Gene ID: 10498 Time: 12:55:09
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 125 of 161 genes for data source: Hapmap. Gene ID: 10544 Time: 12:55:10
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 126 of 161 genes for data source: Hapmap. Gene ID: 10791 Time: 12:55:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 127 of 161 genes for data source: Hapmap. Gene ID: 10875 Time: 12:55:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 128 of 161 genes for data source: Hapmap. Gene ID: 11100 Time: 12:55:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 129 of 161 genes for data source: Hapmap. Gene ID: 22937 Time: 12:55:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 130 of 161 genes for data source: Hapmap. Gene ID: 23460 Time: 12:55:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 131 of 161 genes for data source: Hapmap. Gene ID: 25879 Time: 12:55:20
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 132 of 161 genes for data source: Hapmap. Gene ID: 25930 Time: 12:55:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 133 of 161 genes for data source: Hapmap. Gene ID: 25977 Time: 12:55:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 134 of 161 genes for data source: Hapmap. Gene ID: 26119 Time: 12:55:25
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 135 of 161 genes for data source: Hapmap. Gene ID: 30814 Time: 12:55:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 136 of 161 genes for data source: Hapmap. Gene ID: 50848 Time: 12:55:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 137 of 161 genes for data source: Hapmap. Gene ID: 51538 Time: 12:55:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 138 of 161 genes for data source: Hapmap. Gene ID: 51738 Time: 12:55:31
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 139 of 161 genes for data source: Hapmap. Gene ID: 54936 Time: 12:55:33
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 140 of 161 genes for data source: Hapmap. Gene ID: 54947 Time: 12:55:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 141 of 161 genes for data source: Hapmap. Gene ID: 56158 Time: 12:55:37
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 142 of 161 genes for data source: Hapmap. Gene ID: 56729 Time: 12:55:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 143 of 161 genes for data source: Hapmap. Gene ID: 57085 Time: 12:55:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 144 of 161 genes for data source: Hapmap. Gene ID: 57835 Time: 12:55:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 145 of 161 genes for data source: Hapmap. Gene ID: 58985 Time: 12:55:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 146 of 161 genes for data source: Hapmap. Gene ID: 64333 Time: 12:55:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 147 of 161 genes for data source: Hapmap. Gene ID: 64766 Time: 12:55:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 148 of 161 genes for data source: Hapmap. Gene ID: 81034 Time: 12:55:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 149 of 161 genes for data source: Hapmap. Gene ID: 83877 Time: 12:55:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 150 of 161 genes for data source: Hapmap. Gene ID: 94031 Time: 12:55:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 151 of 161 genes for data source: Hapmap. Gene ID: 116519 Time: 12:55:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 152 of 161 genes for data source: Hapmap. Gene ID: 163702 Time: 12:55:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 153 of 161 genes for data source: Hapmap. Gene ID: 203100 Time: 12:55:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 154 of 161 genes for data source: Hapmap. Gene ID: 221400 Time: 12:55:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 155 of 161 genes for data source: Hapmap. Gene ID: 252995 Time: 12:56:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 156 of 161 genes for data source: Hapmap. Gene ID: 255104 Time: 12:56:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 157 of 161 genes for data source: Hapmap. Gene ID: 255738 Time: 12:56:04
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 158 of 161 genes for data source: Hapmap. Gene ID: 256957 Time: 12:56:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 159 of 161 genes for data source: Hapmap. Gene ID: 259296 Time: 12:56:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 160 of 161 genes for data source: Hapmap. Gene ID: 345456 Time: 12:56:08
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 161 of 161 genes for data source: Hapmap. Gene ID: 732058 Time: 12:56:10
     Getting SNP list for gene.
Exception in thread "main" java.lang.Exception: Couldn't find gene with id of '732058'
	at GetSnpsForGene.printSnps(GetSnpsForGene.java:208)
	at GetSnpsForGene.main(GetSnpsForGene.java:82)
     Warning: Getting list of SNPs for 732058 failed.
WARNING: Error processing Gene for data source Hapmap Gene ID: 732058

Number of valid Illumina score files: 1
------------------------------------------------------
Gene Failures for data source: Hapmap
732058
------------------------------------------------------

Processing 1 of 161 genes for data source: Seattle. Gene ID: 19 Time: 12:59:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 2 of 161 genes for data source: Seattle. Gene ID: 133 Time: 12:59:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 3 of 161 genes for data source: Seattle. Gene ID: 186 Time: 12:59:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 4 of 161 genes for data source: Seattle. Gene ID: 239 Time: 12:59:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 5 of 161 genes for data source: Seattle. Gene ID: 337 Time: 12:59:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 6 of 161 genes for data source: Seattle. Gene ID: 338 Time: 12:59:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 7 of 161 genes for data source: Seattle. Gene ID: 345 Time: 12:59:20
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 8 of 161 genes for data source: Seattle. Gene ID: 348 Time: 12:59:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 9 of 161 genes for data source: Seattle. Gene ID: 462 Time: 12:59:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 10 of 161 genes for data source: Seattle. Gene ID: 551 Time: 12:59:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 11 of 161 genes for data source: Seattle. Gene ID: 558 Time: 12:59:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 12 of 161 genes for data source: Seattle. Gene ID: 624 Time: 12:59:27
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 13 of 161 genes for data source: Seattle. Gene ID: 719 Time: 12:59:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 14 of 161 genes for data source: Seattle. Gene ID: 1071 Time: 12:59:30
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 15 of 161 genes for data source: Seattle. Gene ID: 1163 Time: 12:59:31
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 16 of 161 genes for data source: Seattle. Gene ID: 1185 Time: 12:59:32
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 17 of 161 genes for data source: Seattle. Gene ID: 1232 Time: 12:59:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 18 of 161 genes for data source: Seattle. Gene ID: 1296 Time: 12:59:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 19 of 161 genes for data source: Seattle. Gene ID: 1307 Time: 12:59:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 20 of 161 genes for data source: Seattle. Gene ID: 1524 Time: 12:59:37
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 21 of 161 genes for data source: Seattle. Gene ID: 1584 Time: 12:59:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 22 of 161 genes for data source: Seattle. Gene ID: 1649 Time: 12:59:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 23 of 161 genes for data source: Seattle. Gene ID: 1786 Time: 12:59:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 24 of 161 genes for data source: Seattle. Gene ID: 1889 Time: 12:59:42
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 25 of 161 genes for data source: Seattle. Gene ID: 1906 Time: 12:59:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 26 of 161 genes for data source: Seattle. Gene ID: 2147 Time: 12:59:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 27 of 161 genes for data source: Seattle. Gene ID: 2152 Time: 12:59:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 28 of 161 genes for data source: Seattle. Gene ID: 2153 Time: 12:59:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 29 of 161 genes for data source: Seattle. Gene ID: 2155 Time: 12:59:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 30 of 161 genes for data source: Seattle. Gene ID: 2157 Time: 12:59:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 31 of 161 genes for data source: Seattle. Gene ID: 2159 Time: 12:59:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 32 of 161 genes for data source: Seattle. Gene ID: 2161 Time: 12:59:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 33 of 161 genes for data source: Seattle. Gene ID: 2162 Time: 12:59:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 34 of 161 genes for data source: Seattle. Gene ID: 2165 Time: 13:00:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 35 of 161 genes for data source: Seattle. Gene ID: 2169 Time: 13:00:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 36 of 161 genes for data source: Seattle. Gene ID: 2170 Time: 13:00:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 37 of 161 genes for data source: Seattle. Gene ID: 2244 Time: 13:00:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 38 of 161 genes for data source: Seattle. Gene ID: 2593 Time: 13:00:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 39 of 161 genes for data source: Seattle. Gene ID: 2624 Time: 13:00:08
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 40 of 161 genes for data source: Seattle. Gene ID: 2641 Time: 13:00:10
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 41 of 161 genes for data source: Seattle. Gene ID: 2701 Time: 13:00:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 42 of 161 genes for data source: Seattle. Gene ID: 2744 Time: 13:00:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 43 of 161 genes for data source: Seattle. Gene ID: 2811 Time: 13:00:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 44 of 161 genes for data source: Seattle. Gene ID: 3034 Time: 13:00:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 45 of 161 genes for data source: Seattle. Gene ID: 3075 Time: 13:00:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 46 of 161 genes for data source: Seattle. Gene ID: 3082 Time: 13:00:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 47 of 161 genes for data source: Seattle. Gene ID: 3315 Time: 13:00:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 48 of 161 genes for data source: Seattle. Gene ID: 3329 Time: 13:00:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 49 of 161 genes for data source: Seattle. Gene ID: 3336 Time: 13:00:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 50 of 161 genes for data source: Seattle. Gene ID: 3362 Time: 13:00:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 51 of 161 genes for data source: Seattle. Gene ID: 3455 Time: 13:00:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 52 of 161 genes for data source: Seattle. Gene ID: 3459 Time: 13:00:27
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 53 of 161 genes for data source: Seattle. Gene ID: 3460 Time: 13:00:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 54 of 161 genes for data source: Seattle. Gene ID: 3552 Time: 13:00:31
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 55 of 161 genes for data source: Seattle. Gene ID: 3565 Time: 13:00:32
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 56 of 161 genes for data source: Seattle. Gene ID: 3578 Time: 13:00:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 57 of 161 genes for data source: Seattle. Gene ID: 3596 Time: 13:00:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 58 of 161 genes for data source: Seattle. Gene ID: 3601 Time: 13:00:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 59 of 161 genes for data source: Seattle. Gene ID: 3606 Time: 13:00:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 60 of 161 genes for data source: Seattle. Gene ID: 3690 Time: 13:00:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 61 of 161 genes for data source: Seattle. Gene ID: 3952 Time: 13:00:42
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 62 of 161 genes for data source: Seattle. Gene ID: 3990 Time: 13:00:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 63 of 161 genes for data source: Seattle. Gene ID: 4023 Time: 13:00:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 64 of 161 genes for data source: Seattle. Gene ID: 4025 Time: 13:00:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 65 of 161 genes for data source: Seattle. Gene ID: 4036 Time: 13:00:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 66 of 161 genes for data source: Seattle. Gene ID: 4048 Time: 13:00:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 67 of 161 genes for data source: Seattle. Gene ID: 4049 Time: 13:00:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 68 of 161 genes for data source: Seattle. Gene ID: 4141 Time: 13:00:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 69 of 161 genes for data source: Seattle. Gene ID: 4254 Time: 13:00:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 70 of 161 genes for data source: Seattle. Gene ID: 4312 Time: 13:00:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 71 of 161 genes for data source: Seattle. Gene ID: 4313 Time: 13:00:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 72 of 161 genes for data source: Seattle. Gene ID: 4353 Time: 13:00:56
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 73 of 161 genes for data source: Seattle. Gene ID: 4524 Time: 13:00:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 74 of 161 genes for data source: Seattle. Gene ID: 4548 Time: 13:00:59
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 75 of 161 genes for data source: Seattle. Gene ID: 4681 Time: 13:01:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 76 of 161 genes for data source: Seattle. Gene ID: 4878 Time: 13:01:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 77 of 161 genes for data source: Seattle. Gene ID: 4879 Time: 13:01:02
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 78 of 161 genes for data source: Seattle. Gene ID: 5054 Time: 13:01:04
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 79 of 161 genes for data source: Seattle. Gene ID: 5069 Time: 13:01:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 80 of 161 genes for data source: Seattle. Gene ID: 5196 Time: 13:01:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 81 of 161 genes for data source: Seattle. Gene ID: 5329 Time: 13:01:08
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 82 of 161 genes for data source: Seattle. Gene ID: 5340 Time: 13:01:10
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 83 of 161 genes for data source: Seattle. Gene ID: 5444 Time: 13:01:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 84 of 161 genes for data source: Seattle. Gene ID: 5445 Time: 13:01:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 85 of 161 genes for data source: Seattle. Gene ID: 5446 Time: 13:01:17
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 86 of 161 genes for data source: Seattle. Gene ID: 5473 Time: 13:01:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 87 of 161 genes for data source: Seattle. Gene ID: 5654 Time: 13:01:20
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 88 of 161 genes for data source: Seattle. Gene ID: 5687 Time: 13:01:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 89 of 161 genes for data source: Seattle. Gene ID: 5724 Time: 13:01:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 90 of 161 genes for data source: Seattle. Gene ID: 5742 Time: 13:01:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 91 of 161 genes for data source: Seattle. Gene ID: 5901 Time: 13:01:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 92 of 161 genes for data source: Seattle. Gene ID: 6005 Time: 13:01:27
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 93 of 161 genes for data source: Seattle. Gene ID: 6098 Time: 13:01:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 94 of 161 genes for data source: Seattle. Gene ID: 6288 Time: 13:01:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 95 of 161 genes for data source: Seattle. Gene ID: 6320 Time: 13:01:30
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 96 of 161 genes for data source: Seattle. Gene ID: 6337 Time: 13:01:32
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 97 of 161 genes for data source: Seattle. Gene ID: 6347 Time: 13:01:33
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 98 of 161 genes for data source: Seattle. Gene ID: 6352 Time: 13:01:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 99 of 161 genes for data source: Seattle. Gene ID: 6403 Time: 13:01:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 100 of 161 genes for data source: Seattle. Gene ID: 6464 Time: 13:01:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 101 of 161 genes for data source: Seattle. Gene ID: 6649 Time: 13:01:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 102 of 161 genes for data source: Seattle. Gene ID: 6696 Time: 13:01:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 103 of 161 genes for data source: Seattle. Gene ID: 6754 Time: 13:01:42
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 104 of 161 genes for data source: Seattle. Gene ID: 6772 Time: 13:01:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 105 of 161 genes for data source: Seattle. Gene ID: 7035 Time: 13:01:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 106 of 161 genes for data source: Seattle. Gene ID: 7056 Time: 13:01:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 107 of 161 genes for data source: Seattle. Gene ID: 7060 Time: 13:01:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 108 of 161 genes for data source: Seattle. Gene ID: 7076 Time: 13:01:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 109 of 161 genes for data source: Seattle. Gene ID: 7099 Time: 13:01:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 110 of 161 genes for data source: Seattle. Gene ID: 7124 Time: 13:01:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 111 of 161 genes for data source: Seattle. Gene ID: 7132 Time: 13:01:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 112 of 161 genes for data source: Seattle. Gene ID: 7133 Time: 13:01:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 113 of 161 genes for data source: Seattle. Gene ID: 7292 Time: 13:01:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 114 of 161 genes for data source: Seattle. Gene ID: 7391 Time: 13:01:59
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 115 of 161 genes for data source: Seattle. Gene ID: 7450 Time: 13:02:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 116 of 161 genes for data source: Seattle. Gene ID: 7941 Time: 13:02:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 117 of 161 genes for data source: Seattle. Gene ID: 8402 Time: 13:02:02
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 118 of 161 genes for data source: Seattle. Gene ID: 8516 Time: 13:02:04
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 119 of 161 genes for data source: Seattle. Gene ID: 8673 Time: 13:02:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 120 of 161 genes for data source: Seattle. Gene ID: 8743 Time: 13:02:08
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 121 of 161 genes for data source: Seattle. Gene ID: 8882 Time: 13:02:10
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 122 of 161 genes for data source: Seattle. Gene ID: 9370 Time: 13:02:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 123 of 161 genes for data source: Seattle. Gene ID: 10082 Time: 13:02:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 124 of 161 genes for data source: Seattle. Gene ID: 10498 Time: 13:02:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 125 of 161 genes for data source: Seattle. Gene ID: 10544 Time: 13:02:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 126 of 161 genes for data source: Seattle. Gene ID: 10791 Time: 13:02:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 127 of 161 genes for data source: Seattle. Gene ID: 10875 Time: 13:02:17
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 128 of 161 genes for data source: Seattle. Gene ID: 11100 Time: 13:02:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 129 of 161 genes for data source: Seattle. Gene ID: 22937 Time: 13:02:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 130 of 161 genes for data source: Seattle. Gene ID: 23460 Time: 13:02:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 131 of 161 genes for data source: Seattle. Gene ID: 25879 Time: 13:02:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 132 of 161 genes for data source: Seattle. Gene ID: 25930 Time: 13:02:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 133 of 161 genes for data source: Seattle. Gene ID: 25977 Time: 13:02:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 134 of 161 genes for data source: Seattle. Gene ID: 26119 Time: 13:02:25
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 135 of 161 genes for data source: Seattle. Gene ID: 30814 Time: 13:02:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 136 of 161 genes for data source: Seattle. Gene ID: 50848 Time: 13:02:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 137 of 161 genes for data source: Seattle. Gene ID: 51538 Time: 13:02:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 138 of 161 genes for data source: Seattle. Gene ID: 51738 Time: 13:02:30
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 139 of 161 genes for data source: Seattle. Gene ID: 54936 Time: 13:02:31
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 140 of 161 genes for data source: Seattle. Gene ID: 54947 Time: 13:02:33
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 141 of 161 genes for data source: Seattle. Gene ID: 56158 Time: 13:02:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 142 of 161 genes for data source: Seattle. Gene ID: 56729 Time: 13:02:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 143 of 161 genes for data source: Seattle. Gene ID: 57085 Time: 13:02:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 144 of 161 genes for data source: Seattle. Gene ID: 57835 Time: 13:02:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 145 of 161 genes for data source: Seattle. Gene ID: 58985 Time: 13:02:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 146 of 161 genes for data source: Seattle. Gene ID: 64333 Time: 13:02:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 147 of 161 genes for data source: Seattle. Gene ID: 64766 Time: 13:02:42
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 148 of 161 genes for data source: Seattle. Gene ID: 81034 Time: 13:02:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 149 of 161 genes for data source: Seattle. Gene ID: 83877 Time: 13:02:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 150 of 161 genes for data source: Seattle. Gene ID: 94031 Time: 13:02:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 151 of 161 genes for data source: Seattle. Gene ID: 116519 Time: 13:02:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 152 of 161 genes for data source: Seattle. Gene ID: 163702 Time: 13:02:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 153 of 161 genes for data source: Seattle. Gene ID: 203100 Time: 13:02:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 154 of 161 genes for data source: Seattle. Gene ID: 221400 Time: 13:02:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 155 of 161 genes for data source: Seattle. Gene ID: 252995 Time: 13:02:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 156 of 161 genes for data source: Seattle. Gene ID: 255104 Time: 13:02:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 157 of 161 genes for data source: Seattle. Gene ID: 255738 Time: 13:02:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 158 of 161 genes for data source: Seattle. Gene ID: 256957 Time: 13:02:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 159 of 161 genes for data source: Seattle. Gene ID: 259296 Time: 13:02:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 160 of 161 genes for data source: Seattle. Gene ID: 345456 Time: 13:02:59
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 161 of 161 genes for data source: Seattle. Gene ID: 732058 Time: 13:03:01
     Getting SNP list for gene.
Exception in thread "main" java.lang.Exception: Couldn't find gene with id of '732058'
	at GetSnpsForGene.printSnps(GetSnpsForGene.java:208)
	at GetSnpsForGene.main(GetSnpsForGene.java:82)
     Warning: Getting list of SNPs for 732058 failed.
WARNING: Error processing Gene for data source Seattle Gene ID: 732058

Number of valid Illumina score files: 1
------------------------------------------------------
Gene Failures for data source: Seattle
732058
------------------------------------------------------

Processing 1 of 161 genes for data source: Niehs. Gene ID: 19 Time: 13:03:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 2 of 161 genes for data source: Niehs. Gene ID: 133 Time: 13:03:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 3 of 161 genes for data source: Niehs. Gene ID: 186 Time: 13:03:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 4 of 161 genes for data source: Niehs. Gene ID: 239 Time: 13:03:42
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 5 of 161 genes for data source: Niehs. Gene ID: 337 Time: 13:03:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 6 of 161 genes for data source: Niehs. Gene ID: 338 Time: 13:03:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 7 of 161 genes for data source: Niehs. Gene ID: 345 Time: 13:03:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 8 of 161 genes for data source: Niehs. Gene ID: 348 Time: 13:03:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 9 of 161 genes for data source: Niehs. Gene ID: 462 Time: 13:03:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 10 of 161 genes for data source: Niehs. Gene ID: 551 Time: 13:03:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 11 of 161 genes for data source: Niehs. Gene ID: 558 Time: 13:03:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 12 of 161 genes for data source: Niehs. Gene ID: 624 Time: 13:03:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 13 of 161 genes for data source: Niehs. Gene ID: 719 Time: 13:03:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 14 of 161 genes for data source: Niehs. Gene ID: 1071 Time: 13:03:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 15 of 161 genes for data source: Niehs. Gene ID: 1163 Time: 13:03:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 16 of 161 genes for data source: Niehs. Gene ID: 1185 Time: 13:03:56
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 17 of 161 genes for data source: Niehs. Gene ID: 1232 Time: 13:03:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 18 of 161 genes for data source: Niehs. Gene ID: 1296 Time: 13:03:59
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 19 of 161 genes for data source: Niehs. Gene ID: 1307 Time: 13:04:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 20 of 161 genes for data source: Niehs. Gene ID: 1524 Time: 13:04:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 21 of 161 genes for data source: Niehs. Gene ID: 1584 Time: 13:04:02
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 22 of 161 genes for data source: Niehs. Gene ID: 1649 Time: 13:04:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 23 of 161 genes for data source: Niehs. Gene ID: 1786 Time: 13:04:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 24 of 161 genes for data source: Niehs. Gene ID: 1889 Time: 13:04:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 25 of 161 genes for data source: Niehs. Gene ID: 1906 Time: 13:04:08
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 26 of 161 genes for data source: Niehs. Gene ID: 2147 Time: 13:04:09
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 27 of 161 genes for data source: Niehs. Gene ID: 2152 Time: 13:04:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 28 of 161 genes for data source: Niehs. Gene ID: 2153 Time: 13:04:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 29 of 161 genes for data source: Niehs. Gene ID: 2155 Time: 13:04:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 30 of 161 genes for data source: Niehs. Gene ID: 2157 Time: 13:04:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 31 of 161 genes for data source: Niehs. Gene ID: 2159 Time: 13:04:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 32 of 161 genes for data source: Niehs. Gene ID: 2161 Time: 13:04:17
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 33 of 161 genes for data source: Niehs. Gene ID: 2162 Time: 13:04:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 34 of 161 genes for data source: Niehs. Gene ID: 2165 Time: 13:04:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 35 of 161 genes for data source: Niehs. Gene ID: 2169 Time: 13:04:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 36 of 161 genes for data source: Niehs. Gene ID: 2170 Time: 13:04:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 37 of 161 genes for data source: Niehs. Gene ID: 2244 Time: 13:04:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 38 of 161 genes for data source: Niehs. Gene ID: 2593 Time: 13:04:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 39 of 161 genes for data source: Niehs. Gene ID: 2624 Time: 13:04:25
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 40 of 161 genes for data source: Niehs. Gene ID: 2641 Time: 13:04:27
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 41 of 161 genes for data source: Niehs. Gene ID: 2701 Time: 13:04:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 42 of 161 genes for data source: Niehs. Gene ID: 2744 Time: 13:04:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 43 of 161 genes for data source: Niehs. Gene ID: 2811 Time: 13:04:30
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 44 of 161 genes for data source: Niehs. Gene ID: 3034 Time: 13:04:31
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 45 of 161 genes for data source: Niehs. Gene ID: 3075 Time: 13:04:33
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 46 of 161 genes for data source: Niehs. Gene ID: 3082 Time: 13:04:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 47 of 161 genes for data source: Niehs. Gene ID: 3315 Time: 13:04:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 48 of 161 genes for data source: Niehs. Gene ID: 3329 Time: 13:04:37
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 49 of 161 genes for data source: Niehs. Gene ID: 3336 Time: 13:04:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 50 of 161 genes for data source: Niehs. Gene ID: 3362 Time: 13:04:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 51 of 161 genes for data source: Niehs. Gene ID: 3455 Time: 13:04:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 52 of 161 genes for data source: Niehs. Gene ID: 3459 Time: 13:04:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 53 of 161 genes for data source: Niehs. Gene ID: 3460 Time: 13:04:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 54 of 161 genes for data source: Niehs. Gene ID: 3552 Time: 13:04:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 55 of 161 genes for data source: Niehs. Gene ID: 3565 Time: 13:04:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 56 of 161 genes for data source: Niehs. Gene ID: 3578 Time: 13:04:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 57 of 161 genes for data source: Niehs. Gene ID: 3596 Time: 13:04:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 58 of 161 genes for data source: Niehs. Gene ID: 3601 Time: 13:04:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 59 of 161 genes for data source: Niehs. Gene ID: 3606 Time: 13:04:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 60 of 161 genes for data source: Niehs. Gene ID: 3690 Time: 13:04:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 61 of 161 genes for data source: Niehs. Gene ID: 3952 Time: 13:04:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 62 of 161 genes for data source: Niehs. Gene ID: 3990 Time: 13:04:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 63 of 161 genes for data source: Niehs. Gene ID: 4023 Time: 13:04:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 64 of 161 genes for data source: Niehs. Gene ID: 4025 Time: 13:04:56
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 65 of 161 genes for data source: Niehs. Gene ID: 4036 Time: 13:04:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 66 of 161 genes for data source: Niehs. Gene ID: 4048 Time: 13:04:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 67 of 161 genes for data source: Niehs. Gene ID: 4049 Time: 13:05:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 68 of 161 genes for data source: Niehs. Gene ID: 4141 Time: 13:05:01
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 69 of 161 genes for data source: Niehs. Gene ID: 4254 Time: 13:05:02
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 70 of 161 genes for data source: Niehs. Gene ID: 4312 Time: 13:05:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 71 of 161 genes for data source: Niehs. Gene ID: 4313 Time: 13:05:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 72 of 161 genes for data source: Niehs. Gene ID: 4353 Time: 13:05:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 73 of 161 genes for data source: Niehs. Gene ID: 4524 Time: 13:05:08
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 74 of 161 genes for data source: Niehs. Gene ID: 4548 Time: 13:05:09
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 75 of 161 genes for data source: Niehs. Gene ID: 4681 Time: 13:05:10
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 76 of 161 genes for data source: Niehs. Gene ID: 4878 Time: 13:05:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 77 of 161 genes for data source: Niehs. Gene ID: 4879 Time: 13:05:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 78 of 161 genes for data source: Niehs. Gene ID: 5054 Time: 13:05:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 79 of 161 genes for data source: Niehs. Gene ID: 5069 Time: 13:05:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 80 of 161 genes for data source: Niehs. Gene ID: 5196 Time: 13:05:16
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 81 of 161 genes for data source: Niehs. Gene ID: 5329 Time: 13:05:17
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 82 of 161 genes for data source: Niehs. Gene ID: 5340 Time: 13:05:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 83 of 161 genes for data source: Niehs. Gene ID: 5444 Time: 13:05:20
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 84 of 161 genes for data source: Niehs. Gene ID: 5445 Time: 13:05:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 85 of 161 genes for data source: Niehs. Gene ID: 5446 Time: 13:05:22
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 86 of 161 genes for data source: Niehs. Gene ID: 5473 Time: 13:05:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 87 of 161 genes for data source: Niehs. Gene ID: 5654 Time: 13:05:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 88 of 161 genes for data source: Niehs. Gene ID: 5687 Time: 13:05:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 89 of 161 genes for data source: Niehs. Gene ID: 5724 Time: 13:05:27
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 90 of 161 genes for data source: Niehs. Gene ID: 5742 Time: 13:05:28
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 91 of 161 genes for data source: Niehs. Gene ID: 5901 Time: 13:05:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 92 of 161 genes for data source: Niehs. Gene ID: 6005 Time: 13:05:30
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 93 of 161 genes for data source: Niehs. Gene ID: 6098 Time: 13:05:32
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 94 of 161 genes for data source: Niehs. Gene ID: 6288 Time: 13:05:33
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 95 of 161 genes for data source: Niehs. Gene ID: 6320 Time: 13:05:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 96 of 161 genes for data source: Niehs. Gene ID: 6337 Time: 13:05:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 97 of 161 genes for data source: Niehs. Gene ID: 6347 Time: 13:05:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 98 of 161 genes for data source: Niehs. Gene ID: 6352 Time: 13:05:38
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 99 of 161 genes for data source: Niehs. Gene ID: 6403 Time: 13:05:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 100 of 161 genes for data source: Niehs. Gene ID: 6464 Time: 13:05:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 101 of 161 genes for data source: Niehs. Gene ID: 6649 Time: 13:05:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 102 of 161 genes for data source: Niehs. Gene ID: 6696 Time: 13:05:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 103 of 161 genes for data source: Niehs. Gene ID: 6754 Time: 13:05:44
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 104 of 161 genes for data source: Niehs. Gene ID: 6772 Time: 13:05:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 105 of 161 genes for data source: Niehs. Gene ID: 7035 Time: 13:05:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 106 of 161 genes for data source: Niehs. Gene ID: 7056 Time: 13:05:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 107 of 161 genes for data source: Niehs. Gene ID: 7060 Time: 13:05:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 108 of 161 genes for data source: Niehs. Gene ID: 7076 Time: 13:05:50
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 109 of 161 genes for data source: Niehs. Gene ID: 7099 Time: 13:05:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 110 of 161 genes for data source: Niehs. Gene ID: 7124 Time: 13:05:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 111 of 161 genes for data source: Niehs. Gene ID: 7132 Time: 13:05:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 112 of 161 genes for data source: Niehs. Gene ID: 7133 Time: 13:05:55
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 113 of 161 genes for data source: Niehs. Gene ID: 7292 Time: 13:05:57
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 114 of 161 genes for data source: Niehs. Gene ID: 7391 Time: 13:05:58
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 115 of 161 genes for data source: Niehs. Gene ID: 7450 Time: 13:05:59
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 116 of 161 genes for data source: Niehs. Gene ID: 7941 Time: 13:06:00
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 117 of 161 genes for data source: Niehs. Gene ID: 8402 Time: 13:06:02
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 118 of 161 genes for data source: Niehs. Gene ID: 8516 Time: 13:06:03
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 119 of 161 genes for data source: Niehs. Gene ID: 8673 Time: 13:06:05
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 120 of 161 genes for data source: Niehs. Gene ID: 8743 Time: 13:06:06
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 121 of 161 genes for data source: Niehs. Gene ID: 8882 Time: 13:06:07
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 122 of 161 genes for data source: Niehs. Gene ID: 9370 Time: 13:06:08
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 123 of 161 genes for data source: Niehs. Gene ID: 10082 Time: 13:06:09
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 124 of 161 genes for data source: Niehs. Gene ID: 10498 Time: 13:06:11
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 125 of 161 genes for data source: Niehs. Gene ID: 10544 Time: 13:06:12
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 126 of 161 genes for data source: Niehs. Gene ID: 10791 Time: 13:06:13
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 127 of 161 genes for data source: Niehs. Gene ID: 10875 Time: 13:06:14
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 128 of 161 genes for data source: Niehs. Gene ID: 11100 Time: 13:06:15
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 129 of 161 genes for data source: Niehs. Gene ID: 22937 Time: 13:06:17
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 130 of 161 genes for data source: Niehs. Gene ID: 23460 Time: 13:06:18
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 131 of 161 genes for data source: Niehs. Gene ID: 25879 Time: 13:06:19
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 132 of 161 genes for data source: Niehs. Gene ID: 25930 Time: 13:06:20
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 133 of 161 genes for data source: Niehs. Gene ID: 25977 Time: 13:06:21
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 134 of 161 genes for data source: Niehs. Gene ID: 26119 Time: 13:06:23
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 135 of 161 genes for data source: Niehs. Gene ID: 30814 Time: 13:06:24
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 136 of 161 genes for data source: Niehs. Gene ID: 50848 Time: 13:06:25
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 137 of 161 genes for data source: Niehs. Gene ID: 51538 Time: 13:06:26
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 138 of 161 genes for data source: Niehs. Gene ID: 51738 Time: 13:06:27
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 139 of 161 genes for data source: Niehs. Gene ID: 54936 Time: 13:06:29
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 140 of 161 genes for data source: Niehs. Gene ID: 54947 Time: 13:06:30
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 141 of 161 genes for data source: Niehs. Gene ID: 56158 Time: 13:06:31
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 142 of 161 genes for data source: Niehs. Gene ID: 56729 Time: 13:06:32
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 143 of 161 genes for data source: Niehs. Gene ID: 57085 Time: 13:06:34
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 144 of 161 genes for data source: Niehs. Gene ID: 57835 Time: 13:06:35
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 145 of 161 genes for data source: Niehs. Gene ID: 58985 Time: 13:06:36
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 146 of 161 genes for data source: Niehs. Gene ID: 64333 Time: 13:06:37
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 147 of 161 genes for data source: Niehs. Gene ID: 64766 Time: 13:06:39
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 148 of 161 genes for data source: Niehs. Gene ID: 81034 Time: 13:06:40
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 149 of 161 genes for data source: Niehs. Gene ID: 83877 Time: 13:06:41
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 150 of 161 genes for data source: Niehs. Gene ID: 94031 Time: 13:06:42
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 151 of 161 genes for data source: Niehs. Gene ID: 116519 Time: 13:06:43
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 152 of 161 genes for data source: Niehs. Gene ID: 163702 Time: 13:06:45
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 153 of 161 genes for data source: Niehs. Gene ID: 203100 Time: 13:06:46
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 154 of 161 genes for data source: Niehs. Gene ID: 221400 Time: 13:06:47
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 155 of 161 genes for data source: Niehs. Gene ID: 252995 Time: 13:06:48
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 156 of 161 genes for data source: Niehs. Gene ID: 255104 Time: 13:06:49
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 157 of 161 genes for data source: Niehs. Gene ID: 255738 Time: 13:06:51
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 158 of 161 genes for data source: Niehs. Gene ID: 256957 Time: 13:06:52
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 159 of 161 genes for data source: Niehs. Gene ID: 259296 Time: 13:06:53
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 160 of 161 genes for data source: Niehs. Gene ID: 345456 Time: 13:06:54
     Getting SNP list for gene.
     Creating prettybase file.
     Running ldselect.
     Parsing ldselect.

Processing 161 of 161 genes for data source: Niehs. Gene ID: 732058 Time: 13:06:55
     Getting SNP list for gene.
Exception in thread "main" java.lang.Exception: Couldn't find gene with id of '732058'
	at GetSnpsForGene.printSnps(GetSnpsForGene.java:208)
	at GetSnpsForGene.main(GetSnpsForGene.java:82)
     Warning: Getting list of SNPs for 732058 failed.
WARNING: Error processing Gene for data source Niehs Gene ID: 732058

Number of valid Illumina score files: 1
------------------------------------------------------
Gene Failures for data source: Niehs
732058
------------------------------------------------------

Summary report snps_all_sources.txt written to: /home/m037385/snppicker_paper/SNPApp_AFR_0.90_0.05_1228_1232
Summary report gene_snps_all_sources.txt written to: /home/m037385/snppicker_paper/SNPApp_AFR_0.90_0.05_1228_1232

------------------------------------------------------
Failure Summary: The following gene IDs failed during processing.

 Gene Failures for Hapmap : 732058 
 Gene Failures for Seattle : 732058 
 Gene Failures for Niehs : 732058

------------------------------------------------------
