TOOL=MAPRSeq
TYPE=mrnaseq
VERSION=1.2
ALIGNER=TOPHAT
ANALYSIS=all
PAIRED=1
READLENGTH=50
DISEASE=TEST
PI=@USER@
MEMORY_INFO=@CONFIG_DIR@/memory_info.txt
SAMPLE_INFO=@CONFIG_DIR@/sample_info.txt
TOOL_INFO=@CONFIG_DIR@/tool_info.txt
INPUT_DIR=@INPUT_DIR@
BASE_OUTPUT_DIR=@OUTPUT_DIR@
OUTPUT_FOLDER=test
SAMPLENAMES=SAMPLE1
LABINDEXES=-
LANEINDEX=-
CHRINDEX=1:2:3:4:5:6:7:8:9:10:11:12:13:14:15:16:17:18:19:20:21:22:X:Y:M
FASTQC=No
USE_SUBREAD_FEATURECOUNTS=No
CENTER=MAYO
PLATFORM=illumina
GENOMEBUILD=hg19
SAMPLEINFORMATION=MAPRSeq sample run
FOLDER_FASTQC=NA
DELIVERY_FOLDER=NA
TERTIARY_FOLDER=NA
