#### Memory requirements

#### JVM memory settings
MERGEBAM_JVMX=6g
SORTBAM_JVMX=6g
SCRIPTURE_JVM=6g

#### lincRNA Memory requirements
ANNO_MEM=2G
BAM_STAT=1G
BLAST_MEM=4G
CHROMATIN_MEM=4G
CUFFLINKS_MEM=36G
EMBOSS_MEM=2G
EXON_MEM=2G
FILTERCPAT_MEM=4G
FILTERS_MEM=6G
GEN_MEM=4G
GENE_MEM=2G
MERGEBLAST_MEM=4G
MERGECOUNT_MEM=2G
MERGEGTF_MEM=4G
NEARGENE_MEM=4G
NUM_REPORT=1G
PFAM_MEM=4G
REPORT_MEM=1G
SCRIPTURE_MEM=10G
SCRIPTUREGTF_MEM=6G
SORT_MEM=8G
SPLITBAM_MEM=3G
SPLITFSA_MEM=1G


#### Thread requirements
BLAST_THREADS=4
CUFFLINKS_THREADS=8
PFAM_THREADS=4
SORT_THREADS=4
THREADS=4

CUFFLINKS_STACK=-l h_stack~50M
