A B C D E F G H I J K L M N O P Q R S T U V W

F

FastQCForm - Class in edu.mayo.bsi.ngsportal.client

FastQCForm(ProjectExplorerPage) - Constructor for class edu.mayo.bsi.ngsportal.client.FastQCForm

FastQCParser - Class in edu.mayo.bsi.ngsportal.server

Class to parse a FastQC file, and make the results available to callers

FastQCParser(File) - Constructor for class edu.mayo.bsi.ngsportal.server.FastQCParser

Parse a QC file

FastQCParser(BufferedReader) - Constructor for class edu.mayo.bsi.ngsportal.server.FastQCParser

Parse a QC file

FileLocation - Class in edu.mayo.bsi.ngsportal.shared

Class that holds all the information about a file location in one of the location archives

FileLocation(String, String, String, String) - Constructor for class edu.mayo.bsi.ngsportal.shared.FileLocation

Normal Constructor

FileNamePlusFilter - Class in edu.mayo.bsi.ngsportal.server

Class that filters for files that have a name plus one or more characters

FileNamePlusFilter(String) - Constructor for class edu.mayo.bsi.ngsportal.server.FileNamePlusFilter

Base Constructor: Delete files with baseName plus something more

FileNamePlusFilter(String, boolean) - Constructor for class edu.mayo.bsi.ngsportal.server.FileNamePlusFilter

Base Constructor

findOverlappingSecondaryProjects(String, String) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Iterate over the SecondaryProjectInformation table, looking for SecondaryProjects that do not have an Analysis group with a Beginning and Delivered Status.

findUnmatchedRuns(String[]) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Find any runs in the DB that have samples with Flagstat data, where there isn't a run folder with Flagstat files in any of the testPaths

FlagstatResult - Class in edu.mayo.bsi.ngsportal.shared

@author Gregory Dougherty

FlagstatResult(long, long, int, int) - Constructor for class edu.mayo.bsi.ngsportal.shared.FlagstatResult

Normal Constructor

formatDate(Date) - Static method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Format a date in the format that the servlet wishes to receive dates

formfocus(String) - Static method in class edu.mayo.bsi.ngsportal.client.NGSPortal

Javascript to give an ID'd element in a form the focus