A B C D E F G H I J K L M N O P Q R S T U V W

U

unsetAnalysisFilter() - Method in class edu.mayo.bsi.ngsportal.shared.SGEFilter

Don't filter on analysis

unsetAppFilter() - Method in class edu.mayo.bsi.ngsportal.shared.SGEFilter

Don't filter on application type.

unsetDateFilter() - Method in class edu.mayo.bsi.ngsportal.shared.SGEFilter

Don't filter on date

unsetErrorFilter() - Method in class edu.mayo.bsi.ngsportal.shared.SGEFilter

Don't filter on errors

unsetQueueFilter() - Method in class edu.mayo.bsi.ngsportal.shared.SGEFilter

Don't filter on queue

unsetRunFilter() - Method in class edu.mayo.bsi.ngsportal.shared.SGEFilter

Don't filter on runID

unsetStageFilter() - Method in class edu.mayo.bsi.ngsportal.shared.SGEFilter

Don't filter on workflow stage

unsetUserFilter() - Method in class edu.mayo.bsi.ngsportal.shared.SGEFilter

Don't filter on user

update() - Method in class edu.mayo.bsi.ngsportal.client.SGETabController

update handles the results of a refresh button click.

updateAnalysis(String, String, String) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

updateAnalysis(String, String, String) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Update the database with all the new analyses that have been added

updateAnalysis(String, String, String, AsyncCallback<Boolean>) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalServiceAsync

updateGroup(int, int, String, String) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Updates information about an existing group

updateGroup(int, int, String, String) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Updates information about an existing group

updateGroup(int, int, String, String, AsyncCallback<Boolean>) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalServiceAsync

updateListGridCookie() - Method in class edu.mayo.bsi.ngsportal.client.ProjectSummaryPage

updateMessage(String) - Method in class edu.mayo.bsi.ngsportal.client.InstrumentPanel

updateMessage(PrimaryAnalysisBean) - Method in class edu.mayo.bsi.ngsportal.client.PrimaryStatusPanel

updateMessage(SecondaryAnalysisBean) - Method in class edu.mayo.bsi.ngsportal.client.SecondaryRunStatusPanel

updateMessage(SecondaryAnalysisBean) - Method in class edu.mayo.bsi.ngsportal.client.SecondaryStatusPanel

updateProject(int, String, String, boolean, int[], Integer, Integer, Integer) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

updateProject(int, String, String, boolean, int[], Integer, Integer, Integer) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Updates an existing project.

updateProject(int, String, String, boolean, int[], Integer, Integer, Integer, AsyncCallback<Void>) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalServiceAsync

updateRunDates(String, String) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Query the Primary Analysis database for information about run primary analysis dates

UpdateRunDates - Class in edu.mayo.bsi.ngsportal

@author Gregory Dougherty

UpdateRunDates() - Constructor for class edu.mayo.bsi.ngsportal.UpdateRunDates

updateRunDates(String) - Static method in class edu.mayo.bsi.ngsportal.UpdateRunDates

Run NGSPortalServiceImpl.updateRunDates

updateRunSelections() - Method in class edu.mayo.bsi.ngsportal.client.SGETabController

updateRunSelections sets the possible values of the runID selection control based on the current settings of the date range control

updateRunTypes() - Method in class edu.mayo.bsi.ngsportal.client.SGETabController

updateRunTypes updates the values for the run type selector based on the range of the date range control (eg., if no exome runs were done during February, don't offer the option of selecting only exome runs).

updateSampleIDInfo(String, String) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Query the Dev DB for Sample ID and Ultimate Parent ID information for existing production Sequenced Samples, and update the production Sequenced Samples and their samples

updateSampleInfo(String, String) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Query RLIMS for updated CaptureKit and RLIMSProjectID information for existing Sequenced Samples, and update them

updateSampleName(String, SampleInfo, Record, Command) - Method in class edu.mayo.bsi.ngsportal.client.RunEditPanel

Routine called when the user has decided to change the sample name via the ChangeSample dialog box

updateSecondaryProjects(String, String) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Iterate over the SecondaryProjectInformation table, looking for SecondaryProjects that do not have an Analysis group with a Beginning and Delivered Status.

updateTable() - Method in class edu.mayo.bsi.ngsportal.client.SGEBarGraph

Updates the DataTable by RPC call to NGSPortal and redraws the bargraph.

updateTable() - Method in class edu.mayo.bsi.ngsportal.client.SGEBarGraphImpl

UploadServlet - Class in edu.mayo.bsi.ngsportal.server

Class that builds a Servlet that can receive a run upload

UploadServlet() - Constructor for class edu.mayo.bsi.ngsportal.server.UploadServlet

usage() - Method in class edu.mayo.bsi.ngsportal.AddSecondaryAnalysis

Writes Usage information to a String

usage() - Method in class edu.mayo.bsi.ngsportal.CopyUserPermissions

Writes Usage information to a String

usage() - Method in class edu.mayo.bsi.ngsportal.CreateSecondaryProject

Writes Usage information to a String

usage() - Method in class edu.mayo.bsi.ngsportal.DBAddSecondaryAnalysis

Writes Usage information to a String

usage() - Method in class edu.mayo.bsi.ngsportal.GetRunSamples

Writes Usage information to a String

usage() - Method in class edu.mayo.bsi.ngsportal.GetRunSequences

Writes Usage information to a String

usage() - Method in class edu.mayo.bsi.ngsportal.GetSecondaryAnalysisDates

Writes Usage information to a String

usage() - Method in class edu.mayo.bsi.ngsportal.ParseFolders

Writes Usage information to a String

usage() - Method in class edu.mayo.bsi.ngsportal.PortalTester

Writes Usage information to a String

usage() - Method in class edu.mayo.bsi.ngsportal.server.BatchRun

Method usage.

Usage - Interface in edu.mayo.bsi.ngsportal.server

Interface for classes that have command line arguments.

usage() - Method in interface edu.mayo.bsi.ngsportal.server.Usage

Routine that gives a command line app's usage string, to be printed out whenever the user's command line options are not valid