A B C D E F G H I J K L M N O P Q R S T U V W

R

registerActionHandler(NoteWidget.ActionHandler) - Method in class edu.mayo.bsi.ngsportal.client.NoteWidget

registerCanvasObject(Canvas) - Method in class edu.mayo.bsi.ngsportal.client.CanvasListGrid

remove(Object) - Method in class edu.mayo.bsi.ngsportal.shared.CaseInsensitiveMap

remove(Object) - Method in class edu.mayo.bsi.ngsportal.shared.CaseInsensitiveSet

removeAll(Collection<?>) - Method in class edu.mayo.bsi.ngsportal.shared.CaseInsensitiveSet

removeFromFamily(int, String, String, String) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Remove a sample from a family

removeFromFamily(int, String, String, String) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Remove a sample from a family

removeFromFamily(int, String, String, String, AsyncCallback<Boolean>) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalServiceAsync

removeNonPI(String) - Method in class edu.mayo.bsi.ngsportal.shared.SampleInfo

Remove a non-PI from the list of non-PIs for this sample

removePI(String) - Method in class edu.mayo.bsi.ngsportal.shared.SampleInfo

Remove a PI from the list of PIs for this sample

removeProject(int, String) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

removeProject(int, int) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Code to delete a Patrick style Project

removeProject(int, String) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Removes an existing project.

removeProject(int, String, AsyncCallback<Void>) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalServiceAsync

removeUsersFromGroup(int, int, List<String>) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Remove users from a group

removeUsersFromGroup(int, int, List<String>) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Remove users from a group

removeUsersFromGroup(int, int, List<String>, AsyncCallback<Boolean>) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalServiceAsync

removeUsersFromProject(int, List<String>, String) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Routine to remove one or more users' access to a project

removeUsersFromProject(int, List<String>, String) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Routine to remove one or more users' access to a project

removeUsersFromProject(int, List<String>, String, AsyncCallback<Boolean>) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalServiceAsync

ReportData - Class in edu.mayo.bsi.ngsportal.shared

Class that holds all the information needed for the report to Bruce

ReportData(String, String, String, String, String, Date, Date, long, int, int, double, double, double, double) - Constructor for class edu.mayo.bsi.ngsportal.shared.ReportData

Normal constructor

ReportRunInfo - Class in edu.mayo.bsi.ngsportal.server

@author Gregory Dougherty

ReportsPage - Class in edu.mayo.bsi.ngsportal.client

ReportsPage(NGSPortal, LinkedHashMap<String, String>, LinkedHashMap<String, String>, List<SampleInfo>) - Constructor for class edu.mayo.bsi.ngsportal.client.ReportsPage

ReportsPage.RunTreeNode - Class in edu.mayo.bsi.ngsportal.client

ReportsPage.RunTreeNode(String, String, String) - Constructor for class edu.mayo.bsi.ngsportal.client.ReportsPage.RunTreeNode

ReportsPage.SampleTreeNode - Class in edu.mayo.bsi.ngsportal.client

ReportsPage.SampleTreeNode(String) - Constructor for class edu.mayo.bsi.ngsportal.client.ReportsPage.SampleTreeNode

reset() - Method in class edu.mayo.bsi.ngsportal.client.ProjectExplorerPage.RunTreeNode

Signals that this TreeNode object's instance variable data has gone stale and resets object back to "new" state

resetReader() - Method in class edu.mayo.bsi.ngsportal.server.Compressor

Routine to close the current reader, and get a new reader at the start of the file.

ResultInfo - Class in edu.mayo.bsi.ngsportal.shared

Conveyer class to get results from the server to the client.

ResultInfo(String, String, String, String, String, boolean) - Constructor for class edu.mayo.bsi.ngsportal.shared.ResultInfo

retainAll(Collection<?>) - Method in class edu.mayo.bsi.ngsportal.shared.CaseInsensitiveSet

retainSample(int, Date, String, List<String>, String, String, boolean) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Mark a sample or set of samples as needing their data files to be retained

retainSample(int, Date, String, List<String>, String, String, boolean) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Mark a sample or set of samples as needing their data files to be retained

retainSample(int, Date, String, List<String>, String, String, boolean, AsyncCallback<Boolean>) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalServiceAsync

revokeProjectAccess(int, String, String, List<String>) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Routine to remove samples from a project

revokeProjectAccess(int, String, String, List<String>) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Routine to remove samples from a project

revokeProjectAccess(int, String, String, List<String>, AsyncCallback<Boolean>) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalServiceAsync

revokeUserAccess(int, List<String>, String, List<String>) - Method in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Routine to remove users' access to samples that the caller has PI access to, or where the caller has all sample access.

revokeUserAccess(int, List<String>, String, List<String>) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Routine to remove users' access to samples that the caller has PI access to, or where the caller has all sample access.

revokeUserAccess(int, List<String>, String, List<String>, AsyncCallback<Boolean>) - Method in interface edu.mayo.bsi.ngsportal.shared.NGSPortalServiceAsync

RunData - Class in edu.mayo.bsi.ngsportal.shared

RunData(int, String, String, String, String, String, Date, Date, Date, Date, Date) - Constructor for class edu.mayo.bsi.ngsportal.shared.RunData

Normal Constructor

RunEditPanel - Class in edu.mayo.bsi.ngsportal.client

@author Gregory Dougherty

RunEditPanel(NGSPortal, LinkedHashMap<String, String>, LinkedHashMap<String, String>, List<SampleInfo>) - Constructor for class edu.mayo.bsi.ngsportal.client.RunEditPanel

Default Constructor