A B C D E F G H I J K L M N O P Q R S T U V W

K

kAddSecondaryAnalysis - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Parameter that says we're doing Add the Secondary Analysis

kAlreadyExists - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Tried to add an item that is already in the DB

kAnalysisDate - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Date Analysis was done

kAnalysisName - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Name of the Analysis Project the AnalysisGroup belongs to

kAppNameQuery - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Application that did the Secondary Analysis

kArgumentSeparator - Static variable in class edu.mayo.bsi.ngsportal.server.GetOpts

Character that specifies how multiple arguments are separated in a return string

kAttachToGroup - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Specifies that the key : value pair is about a Group

kAttachToGroup - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Specifies that the key : value pair is about a Group

kAttachToProject - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Specifies that the key : value pair is about a Project

kAttachToProject - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Specifies that the key : value pair is about a Project

kAttachToRun - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Specifies that the key : value pair is about a run

kAttachToRun - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Specifies that the key : value pair is about a run

kAttachToSample - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Specifies that the key : value pair is about a sample

kAttachToSample - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Specifies that the key : value pair is about a sample

kAttachToSequencedSample - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Specifies that the key : value pair is about a sequenced sample

kAttachToSequencedSample - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Specifies that the key : value pair is about a sequenced sample

kAttachToUser - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Specifies that the key : value pair is about a user

kAttachToUser - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Specifies that the key : value pair is about a user

kBZipCompression - Static variable in class edu.mayo.bsi.ngsportal.server.Compressor

Signifies a file using BZip compression.

kCancelFollowUp - Static variable in class edu.mayo.bsi.ngsportal.client.NGSPortal

Command to execute if caller clicks on the Cancel button

kCompleteQuery - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Parameter to include if analysis is complete

kConnection - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

URL Parameter for the connectionID to decode the password of the user

keySet() - Method in class edu.mayo.bsi.ngsportal.shared.CaseInsensitiveMap

Returns the keys that were passed in, rather than the case insensitive keys actually used.

kFailedQuery - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Parameter to include if analysis failed

kFamilyID - Static variable in class edu.mayo.bsi.ngsportal.client.MetadataTab

Field specifying the Family ID

kFastQCellInfoCol - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

The part of the FastQ or Flagstat file name that holds the flowcell information

kFastQSplitter - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

String that divides the components of a FastQ File's name

kField_AppType - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleTreeGrid

kField_CaptureKit - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleTreeGrid

kField_Cycles - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleTreeGrid

kField_Flowcell - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleTreeGrid

kField_IndexSeq - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleTreeGrid

kField_IsControl - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleTreeGrid

kField_IsIndexVendor - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleTreeGrid

kField_Lane - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleTreeGrid

kField_ReadType - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleTreeGrid

kField_RlimsID - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleTreeGrid

kField_RLIMSProjectID - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleTreeGrid

kField_RunName - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleTreeGrid

kField_Species - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleTreeGrid

kFieldName_AppType - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_CaptureKit - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_Cycles - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_FamilyID - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_FileLocation - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_Flowcell - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_IndexSeq - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_IsControl - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_IsIndexVendor - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_Lane - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_ParentID - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_ReadType - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_RlimsID - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_RLIMSProject - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_RunName - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_SampleName - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFieldName_Species - Static variable in class edu.mayo.bsi.ngsportal.client.sample.SampleListGrid

kFirstLabUserRole - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

The smallest role number that specifies a lab related user

kFlowCell - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Flow cell the run was run on

kFlowSplitter - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

String that divides the flow cell information of a FastQ File's name

kGetUserRuns - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Query Parameter to tell the servlet to retrieve the runs accessible by a given user

kGZipCompression - Static variable in class edu.mayo.bsi.ngsportal.server.Compressor

Signifies a file using GZip compression.

kIndexQuery - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Index sequence for the sample, if any

kIndexSeqLength - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

Allowed length for a non-empty Index Sequence

kInvalidID - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

An invalid DB ID

kJVMIsDev - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

JVM system property that indicates whether using Dev DB, or Prod DB

kJVMIsTunneled - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

JVM system property that indicates whether using a tunneled connection to the primary DB, or else connecting directly

kLanesQuery - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Lanes the analysis was run on, none for all lanes

kLastLabUserRole - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

The largest role number that specifies a lab related user

kLogLevelDebug - Static variable in class edu.mayo.bsi.ngsportal.client.NGSPortal

Normal Debugging Log level

kLogLevelDebug - Static variable in class edu.mayo.bsi.ngsportal.client.NGSPortalDashboard

Display some debugging info

kLogLevelLogAllMessages - Static variable in class edu.mayo.bsi.ngsportal.client.NGSPortal

Log level for the most detailed and normally never want to see it information

kLogLevelLogAllMessages - Static variable in class edu.mayo.bsi.ngsportal.client.NGSPortalDashboard

Display an excessive amount of debugging info

kLogLevelLogDeepDebug - Static variable in class edu.mayo.bsi.ngsportal.client.NGSPortal

Debugging Log level when want to see almost all information

kLogLevelLogDeepDebug - Static variable in class edu.mayo.bsi.ngsportal.client.NGSPortalDashboard

Display more debugging info

kLogLevelLogInfo - Static variable in class edu.mayo.bsi.ngsportal.client.NGSPortal

Normal Log level

kLogLevelLogInfo - Static variable in class edu.mayo.bsi.ngsportal.client.NGSPortalDashboard

Normal Level

kNoCompression - Static variable in class edu.mayo.bsi.ngsportal.server.Compressor

Signifies an uncompressed file, or at least one whose compression we don't understand.

kNoSaveFollowUp - Static variable in class edu.mayo.bsi.ngsportal.client.NGSPortal

Command to execute if caller clicks on the Don't Save button

kNoShortArg - Static variable in class edu.mayo.bsi.ngsportal.server.GetOpts

Character that specifies that there is no short argument

kNumFollowUps - Static variable in class edu.mayo.bsi.ngsportal.client.NGSPortal

Number of follow up commands to pass in

kNumNegReturnCodes - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Count of failure codes

kParentID - Static variable in class edu.mayo.bsi.ngsportal.client.MetadataTab

Field specifying the Parent ID

kPassword - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

URL Parameter for the password of the user who will own this run

kPasswordParam - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

On encoded byte of the password per parameter

kQCDataFile - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

The file that contains the QC information

kQCDataFile - Static variable in class edu.mayo.bsi.ngsportal.server.UploadServlet

The file that contains the QC information

kQCRunInformation - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Information about the QC Run

kQCRunInformation - Static variable in class edu.mayo.bsi.ngsportal.server.UploadServlet

Information about the QC Run

kReAnalysisType - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Project Type for a ReAnalysis Project

kReturnAll - Static variable in class edu.mayo.bsi.ngsportal.shared.SplitFile

Constant to say want String.split to find every possible split in a String.

kRlimsID - Static variable in class edu.mayo.bsi.ngsportal.client.MetadataTab

Field specifying the RLIMS ID

kRoleAdmin - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRoleCoPI - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRoleInformaticsLead - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRoleInformaticsPhdLead - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRoleInformaticsSpecialist - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRoleIt - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRoleLabManager - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRoleLabTech - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRolePI - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRoleProjCreator - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRoleProjLead - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRoleProjPI - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRoleProjSpec - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRoleResearcher - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRoleSpa - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRoleStatistician - Static variable in interface edu.mayo.bsi.ngsportal.shared.NGSPortalService

kRunName - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

The RLIMS name for the run

kRunName - Static variable in class edu.mayo.bsi.ngsportal.server.UploadServlet

The RLIMS name for the run

kRunQuery - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Name of the run the analysis was done on

kSampleName - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

The Sample Name

kSampleName - Static variable in class edu.mayo.bsi.ngsportal.server.UploadServlet

The Sample Name

kSaveFollowUp - Static variable in class edu.mayo.bsi.ngsportal.client.NGSPortal

Command to execute if caller clicks on the Save button

kServerWaitTime - Static variable in class edu.mayo.bsi.ngsportal.client.NGSPortal

Amount of time, in milliseconds, to wait for the server before putting up a progress dialog

kServletVersion - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Version given to callers of the servlet Web Page, as opposed to the GWT web page

kStatusQuery - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Status of the analysis

kUploadData - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Query Parameter to tell the servlet to load one or more data files

kUploadData - Static variable in class edu.mayo.bsi.ngsportal.server.UploadServlet

Query Parameter to tell the servlet to load one or more data files

kUserName - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

URL Parameter for the lan id of the user who will own this run

kUserName - Static variable in class edu.mayo.bsi.ngsportal.server.UploadServlet

URL Parameter for the lan id of the user who will own this run

kUserParam - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Database user name

kValidCopyRoles - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Roles that can be granted to a user via copyUserPermissions ()

kVersion - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Version of the analysis

kWriteDir - Static variable in class edu.mayo.bsi.ngsportal.server.NGSPortalServiceImpl

Where the upload servlets save data files

kZipCompression - Static variable in class edu.mayo.bsi.ngsportal.server.Compressor

Signifies a file using Zip compression.