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| Packages that use SampleInfo | |
|---|---|
| edu.mayo.bsi.ngsportal.client | |
| edu.mayo.bsi.ngsportal.client.sample | |
| edu.mayo.bsi.ngsportal.server | |
| edu.mayo.bsi.ngsportal.shared | |
| Uses of SampleInfo in edu.mayo.bsi.ngsportal.client |
|---|
| Methods in edu.mayo.bsi.ngsportal.client that return SampleInfo | |
|---|---|
SampleInfo |
ReportsPage.SampleTreeNode.getSampleInfo()
|
SampleInfo |
ProjectExplorerPage.SampleTreeNode.getSampleInfo()
|
| Methods in edu.mayo.bsi.ngsportal.client that return types with arguments of type SampleInfo | |
|---|---|
List<SampleInfo> |
ReportsPage.RunTreeNode.getSamples()
|
List<SampleInfo> |
ProjectExplorerPage.RunTreeNode.getSamples()
|
| Methods in edu.mayo.bsi.ngsportal.client with parameters of type SampleInfo | |
|---|---|
void |
ReportsPage.SampleTreeNode.setSampleInfo(SampleInfo sampleInfo)
|
void |
ProjectExplorerPage.SampleTreeNode.setSampleInfo(SampleInfo sampleInfo)
|
void |
RunEditPanel.updateSampleName(String newName,
SampleInfo theSample,
com.smartgwt.client.data.Record newRecord,
com.google.gwt.user.client.Command followUp)
Routine called when the user has decided to change the sample name via the ChangeSample dialog box |
| Method parameters in edu.mayo.bsi.ngsportal.client with type arguments of type SampleInfo | |
|---|---|
void |
NGSPortal.getSamples(String piName,
String runID,
String appType,
com.google.gwt.user.client.rpc.AsyncCallback<List<SampleInfo>> callback)
Get the samples from the server, that the user has access to, for the given run and PI |
boolean |
NGSPortal.handleSampleInfoListResults(String callback,
List<SampleInfo> result)
Handle the results of a call to the server that returns a list of SampleInfo |
void |
SampleHandler.onSuccess(List<SampleInfo> result)
|
void |
HandleGetSampleInfoList.onSuccess(List<SampleInfo> result)
|
void |
MetadataTab.setMetadata(List<SampleInfo> theSamples,
RunData theRunData,
boolean isSecondaryDelivered)
Update the displayed data, getting rid of what was previously displayed |
void |
NGSPortal.setRun(String piName,
String runID,
RunData runData,
List<SampleInfo> samples,
int[] deletedIDs,
com.google.gwt.user.client.Command followUp)
Update all the metadata for a given run, owned by a given PI |
void |
RunEditPanel.setSampleNames(List<SampleInfo> sampleInfo)
Update the list of available Sample Names |
void |
RunEditPanel.setSamples(List<SampleInfo> results)
Update the samples ListGrid with the SampleInfo for the current run |
void |
ReportsPage.RunTreeNode.setSamples(List<SampleInfo> samples)
|
void |
ProjectExplorerPage.RunTreeNode.setSamples(List<SampleInfo> samples)
|
| Constructors in edu.mayo.bsi.ngsportal.client with parameters of type SampleInfo | |
|---|---|
ChangeSampleNameDialog(String newName,
String oldName,
String species,
String captureKit,
String rlimsProject,
String diseaseType,
SampleInfo theSample,
RunEditPanel editor,
com.smartgwt.client.data.Record newRecord,
com.google.gwt.user.client.Command followUp)
Create and show a dialog box that lets the user add a new Sample to the DB, or just change its name |
|
| Constructor parameters in edu.mayo.bsi.ngsportal.client with type arguments of type SampleInfo | |
|---|---|
HandleMetadataResult(MetadataTab target,
List<SampleInfo> theSamples,
RunData theRunData)
Standard Constructor |
|
ProjectExplorerPage(NGSPortal portal,
LinkedHashMap<String,String> applicationTypeList,
LinkedHashMap<String,String> readTypeList,
List<SampleInfo> sampleInfoList)
The Sample Explorer |
|
ReportsPage(NGSPortal portal,
LinkedHashMap<String,String> applicationTypeList,
LinkedHashMap<String,String> readTypeList,
List<SampleInfo> sampleInfoList)
|
|
RunEditPanel(NGSPortal portal,
LinkedHashMap<String,String> appTypes,
LinkedHashMap<String,String> readTypes,
List<SampleInfo> sampleInfo)
Default Constructor |
|
| Uses of SampleInfo in edu.mayo.bsi.ngsportal.client.sample |
|---|
| Methods in edu.mayo.bsi.ngsportal.client.sample that return types with arguments of type SampleInfo | |
|---|---|
List<SampleInfo> |
SampleTreeGrid.getAllSamples()
Gets All samples from the tree. |
List<SampleInfo> |
SampleListGrid.getAllSamples()
Gets All samples from the ListGrid. |
List<SampleInfo> |
SampleTreeGrid.getSelectedSamples()
Get samples selected in the tree. |
List<SampleInfo> |
SampleListGrid.getSelectedSamples()
Get samples selected in the ListGrid. |
| Methods in edu.mayo.bsi.ngsportal.client.sample with parameters of type SampleInfo | |
|---|---|
void |
SampleActionCallback.actionPerformed(SampleInfo sample)
|
| Method parameters in edu.mayo.bsi.ngsportal.client.sample with type arguments of type SampleInfo | |
|---|---|
void |
SampleListGrid.selectSamples(List<SampleInfo> samples)
|
void |
SampleTreeGrid.selectSamples(List<SampleInfo> samples,
boolean isEnabled)
Programmatic way to select samples rendered in the tree. |
void |
SampleListGrid.setSamples(Collection<SampleInfo> samples)
Sets the sample data to be displayed in the grid. |
void |
SampleTreeGrid.setSamples(List<SampleInfo> samples)
Sets the sample data to be displayed in the tree. |
void |
SampleTreeGrid.setSamplesIsEnabled(List<SampleInfo> samples,
boolean isEnabled)
Marks the specified samples as enabled/disabled. |
void |
SampleListGrid.setSamplesIsEnabled(List<SampleInfo> samples,
boolean isEnabled)
Marks the specified samples in the ListGrid as enabled/disabled. |
| Uses of SampleInfo in edu.mayo.bsi.ngsportal.server |
|---|
| Methods in edu.mayo.bsi.ngsportal.server that return types with arguments of type SampleInfo | |
|---|---|
List<SampleInfo> |
NGSPortalServiceImpl.getSampleNames(int connectionID,
String piName,
String runID)
Get all the information about all the samples from a given run, owned by a given PI |
List<SampleInfo> |
NGSPortalServiceImpl.getSamples(int connectionID,
String piName,
String runID,
String appType,
String projectName)
Get all the information about all the samples from a given run, owned by a given PI |
| Method parameters in edu.mayo.bsi.ngsportal.server with type arguments of type SampleInfo | |
|---|---|
boolean |
NGSPortalServiceImpl.setRunData(int connectionID,
String piName,
String runID,
RunData theRun,
List<SampleInfo> samples,
int[] deletedIDs)
Update all the metadata for a given run, owned by a given PI |
| Uses of SampleInfo in edu.mayo.bsi.ngsportal.shared |
|---|
| Methods in edu.mayo.bsi.ngsportal.shared that return SampleInfo | |
|---|---|
static SampleInfo |
SampleInfo.getFromListByID(List<SampleInfo> theList,
int theID)
Determines if theList contains a Sample that has the sampleID theID |
static SampleInfo |
SampleInfo.getFromListBySampleID(List<SampleInfo> theList,
int theID)
Determines if theList contains a Sample that has the sampleID theID |
| Methods in edu.mayo.bsi.ngsportal.shared that return types with arguments of type SampleInfo | |
|---|---|
List<SampleInfo> |
NGSPortalService.getSampleNames(int connectionID,
String piName,
String runID)
Get the name, RLIMS ID, and DB ID of all the samples in the DB, or only those samples associated with a given Run, PI, or both |
List<SampleInfo> |
SecondaryProjectInfo.getSamples()
|
List<SampleInfo> |
NGSPortalService.getSamples(int connectionID,
String piName,
String runID,
String appType,
String projectName)
Get all the information about all the samples from a given run, owned by a given PI |
| Method parameters in edu.mayo.bsi.ngsportal.shared with type arguments of type SampleInfo | |
|---|---|
static SampleInfo |
SampleInfo.getFromListByID(List<SampleInfo> theList,
int theID)
Determines if theList contains a Sample that has the sampleID theID |
static SampleInfo |
SampleInfo.getFromListBySampleID(List<SampleInfo> theList,
int theID)
Determines if theList contains a Sample that has the sampleID theID |
void |
NGSPortalServiceAsync.getSampleNames(int connectionID,
String piName,
String runID,
com.google.gwt.user.client.rpc.AsyncCallback<List<SampleInfo>> callback)
|
void |
NGSPortalServiceAsync.getSamples(int connectionID,
String piName,
String runID,
String appType,
String projectName,
com.google.gwt.user.client.rpc.AsyncCallback<List<SampleInfo>> callback)
|
boolean |
SampleInfo.isInList(List<SampleInfo> theList)
Determines if theList contains a Sample that has the same sampleID as this Sample |
boolean |
NGSPortalService.setRunData(int connectionID,
String piName,
String runID,
RunData theRun,
List<SampleInfo> samples,
int[] deletedIDs)
Update all the metadata for a given run, owned by a given PI, and for its samples |
void |
NGSPortalServiceAsync.setRunData(int connectionID,
String piName,
String runID,
RunData theRun,
List<SampleInfo> samples,
int[] deletedIDs,
com.google.gwt.user.client.rpc.AsyncCallback<Boolean> callback)
|
| Constructor parameters in edu.mayo.bsi.ngsportal.shared with type arguments of type SampleInfo | |
|---|---|
SecondaryProjectInfo(String projectName,
String projectType,
String notes,
Date createDate,
Integer creator,
Integer pi,
Integer lead,
Integer specialist,
List<SampleInfo> samples)
Standard Constructor |
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