edu.mayo.bsi.ngsportal.shared
Class SGEFilter

java.lang.Object
  edu.mayo.bsi.ngsportal.shared.SGEFilter

All Implemented Interfaces:

com.google.gwt.user.client.rpc.IsSerializable

public class SGEFilter
extends Object
implements com.google.gwt.user.client.rpc.IsSerializable

The SGEFilter class holds a set of filter settings for generating metrics.

Author:

m102772

Constructor Summary

SGEFilter()
Constructs a new filter object.

Method Summary

String	getAnalysisFilter() Return the analysis type being matched
String	getAppFilter() Return the value of application to match
Date	getEndDate() Return the end date of the date filter window
boolean	getFilterPrimary() Return whether primary runs are being admitted by the filter
boolean	getFilterSecondary() Return whether secondary runs are being admitted by the filter
String	getQueueFilter() Return the value of the queue being matched
String	getRunIDFilter() Return the value of RunID being matched
Date	getStartDate() Return the start date of the date filter window
String	getUserFilter() Return the value of the user being matched
List<String>	getValidRunIDs() Gets the list of RunIDs to filter against
boolean	isAnalysisFilter()
boolean	isAppFilter()
boolean	isDateFilter()
boolean	isErrorFilter()
boolean	isQueueFilter()
boolean	isRunFilter()
boolean	isUserFilter()
void	setAnalysisFilter(String value)
void	setAppFilter(String value)
void	setDateFilter(Date startDate, Date endDate) Set as a date filter
void	setErrorFilter() Set as a filter for errors
void	setQueueFilter(String value)
void	setRunFilter(String value)
void	setStageFilterPrimary() Set as a filter for primary analysis
void	setStageFilterSecondary() Set as a filter for secondary analysis
void	setUserFilter(String value)
void	setValidRunIDs(List<String> validList) Accepts a list of RunIDs to filter against
void	unsetAnalysisFilter() Don't filter on analysis
void	unsetAppFilter() Don't filter on application type.
void	unsetDateFilter() Don't filter on date
void	unsetErrorFilter() Don't filter on errors
void	unsetQueueFilter() Don't filter on queue
void	unsetRunFilter() Don't filter on runID
void	unsetStageFilter() Don't filter on workflow stage
void	unsetUserFilter() Don't filter on user

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SGEFilter

public SGEFilter()

Constructs a new filter object.

Method Detail

isAppFilter

public boolean isAppFilter()

Returns:

true if this filter is set for application type

isRunFilter

public boolean isRunFilter()

Returns:

true if filters RunIDs

isQueueFilter

public boolean isQueueFilter()

Returns:

true if filters on specific queues

isUserFilter

public boolean isUserFilter()

Returns:

true if filters on specific user

isAnalysisFilter

public boolean isAnalysisFilter()

Returns:

true if filters on specific analysis

isErrorFilter

public boolean isErrorFilter()

Returns:

true if filters on errors

isDateFilter

public boolean isDateFilter()

Returns:

true if contains a date range

setRunFilter

public void setRunFilter(String value)

Parameters:

value - String containing a runID to match

setQueueFilter

public void setQueueFilter(String value)

Parameters:

value - String containing a queue to match

setUserFilter

public void setUserFilter(String value)

Parameters:

value - String containing a userID

setAppFilter

public void setAppFilter(String value)

Parameters:

value - String containing an application type (GENOME_GPS, MAPRSEQ, etc)

setAnalysisFilter

public void setAnalysisFilter(String value)

Parameters:

value - String containing an analysis type (whole_genome, exome, etc)

setStageFilterPrimary

public void setStageFilterPrimary()

Set as a filter for primary analysis

setStageFilterSecondary

public void setStageFilterSecondary()

Set as a filter for secondary analysis

setErrorFilter

public void setErrorFilter()

Set as a filter for errors

setDateFilter

public void setDateFilter(Date startDate,
                          Date endDate)

Set as a date filter

Parameters:

startDate -

endDate -

unsetAppFilter

public void unsetAppFilter()

Don't filter on application type.

unsetRunFilter

public void unsetRunFilter()

Don't filter on runID

unsetQueueFilter

public void unsetQueueFilter()

Don't filter on queue

unsetUserFilter

public void unsetUserFilter()

Don't filter on user

unsetAnalysisFilter

public void unsetAnalysisFilter()

Don't filter on analysis

unsetStageFilter

public void unsetStageFilter()

Don't filter on workflow stage

unsetErrorFilter

public void unsetErrorFilter()

Don't filter on errors

unsetDateFilter

public void unsetDateFilter()

Don't filter on date

getAppFilter

public String getAppFilter()

Return the value of application to match

Returns:

String or null

getRunIDFilter

public String getRunIDFilter()

Return the value of RunID being matched

Returns:

String or null

getQueueFilter

public String getQueueFilter()

Return the value of the queue being matched

Returns:

String or null

getUserFilter

public String getUserFilter()

Return the value of the user being matched

Returns:

String or null

getAnalysisFilter

public String getAnalysisFilter()

Return the analysis type being matched

Returns:

String or null

getFilterPrimary

public boolean getFilterPrimary()

Return whether primary runs are being admitted by the filter

Returns:

boolean

getFilterSecondary

public boolean getFilterSecondary()

Return whether secondary runs are being admitted by the filter

Returns:

boolean

getStartDate

public Date getStartDate()

Return the start date of the date filter window

Returns:

Date or null

getEndDate

public Date getEndDate()

Return the end date of the date filter window

Returns:

Date or null

setValidRunIDs

public void setValidRunIDs(List<String> validList)

Accepts a list of RunIDs to filter against

Parameters:

validList -

getValidRunIDs

public List<String> getValidRunIDs()

Gets the list of RunIDs to filter against

Returns:

List or null if empty