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Class Summary |
| AnalysisDriver |
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| ArrayRoutines |
Routines for manipulating arrays of Objects, since Java's class does a poor job of it. |
| AuthenticatorLdapImpl |
Adapter between interface Authenticator and the mayo-commons-directory
LdapWrapper implementation. |
| BaseNGSPortalServiceTest |
|
| BatchRun |
@author Gregory Dougherty |
| BrainSurgery |
Class to move Status values and keep everything in sync. |
| Compressor |
Class that seamlessly handles reading and writing Zipped, Gzipped, and Bzipped files, using Java's
built in code for dealing with Zipped files, and Apache's code for dealing with BZipped and Gzipped
files. |
| ContactSorter |
@author Gregory Dougherty |
| DownloadServlet |
@author m106573 |
| FastQCParser |
Class to parse a FastQC file, and make the results available to callers |
| FileNamePlusFilter |
Class that filters for files that have a name plus one or more characters |
| GetOpts |
A utility class to handle getting user options. |
| GwtRpcDataSource |
Data source with ability to communicate with server by GWT RPC. |
| HTMLCoder |
Class to encode and decode all the parameters needed to do a search on the server, or to
rebuild the interface on the client. |
| HTTPCoder |
@author Gregory Dougherty |
| NGSParser |
@author Gregory Dougherty |
| NGSPortalServiceImpl |
The server side implementation of the RPC service. |
| Pair |
@author Gregory Dougherty |
| ParseDriver |
@author Gregory Dougherty |
| PortalConnection |
Class that tracks information about a person who is using the NGS Portal |
| PortalEmail |
Class that extends HtmlEmail, and lets us block sending email messages during unit testing |
| ProjectTest |
|
| QCResultsUploader |
@author Gregory Dougherty |
| ReportRunInfo |
@author Gregory Dougherty |
| SampleData |
Class holding the sample data from a Sequenced Sample, so it can be printed out |
| SessionKey |
|
| SQLHandler |
Class to handle all the SQL Parsing, to decrease the size of the NGSPortalServiceImpl class |
| UploadServlet |
Class that builds a Servlet that can receive a run upload |
| WeeklyProjectReports |
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