Uses of Interface
edu.mayo.bsi.ngsportal.server.Usage

Packages that use Usage

edu.mayo.bsi.ngsportal
edu.mayo.bsi.ngsportal.server

Uses of Usage in edu.mayo.bsi.ngsportal

Classes in edu.mayo.bsi.ngsportal that implement Usage

class	AddSecondaryAnalysis Class for app that adds secondary analysis via an HTTP call to the servlet
class	CopyUserPermissions Class for app that copies user permissions (i.e.
class	CreateSecondaryProject Class for app that creates a secondary analysis project via an HTTP call to the servlet
class	DBAddSecondaryAnalysis Class for app that adds secondary analysis directly to the database
class	GetRunSamples Get all the samples for a run from the database and print the results in the following order: Run Name Flow Cell Instrument RLIMS BatchID Start Date Primary Analysis Status Instrument Complete Date Primary Complete Date Primary QC Complete Date Primary Delivery Date Sample Name Sample RLIMS ID Sequencing RLIMS Project ID Lane App Type Read Type Num Cycles Is Control Is Vendor Index Index Sequence
class	GetRunSequences Get a count of all the samples for a run from the database and print the results in the following order: Run Name Num Sequences If the run does not exist in the DB, return it with 0 sequences
class	GetSecondaryAnalysisDates Get all the samples (possibly of a given application type) for all the runs from the database that had primary analysis finish within a specified time, and print the results in the following order: Run Name Application Investigator CIM BIC Primary Delivered Secondary Complete Secondary Delivered
class	ParseFolders Class for app that adds secondary analysis directly to the database
class	PortalTester Class used to test features as they get added to NGSPortalService.

Uses of Usage in edu.mayo.bsi.ngsportal.server

Classes in edu.mayo.bsi.ngsportal.server that implement Usage

class

BatchRun @author Gregory Dougherty

Methods in edu.mayo.bsi.ngsportal.server with parameters of type Usage

static String[]

GetOpts.parseArgs(String[] args, Usage target) Parse a command line, given the already added GetOpts descriptions