edu.mayo.bsi.ngsportal
Class SetFileLocations

java.lang.Object
  edu.mayo.bsi.ngsportal.SetFileLocations

public class SetFileLocations
extends Object

This class creates a command line tool that takes a file whose tab delimited lines are of the form:

PI (<last name>_<first name>[_<lan ID>])
run name
sample name
location (NL | RA | X)
[File Size (bytes | KB | MB | GB)]

(where the first line is an ignored header line), and adds the information to the NGS Portal Database.

Invoked by java -jar SetFileLocations.jar [properties file] [data file]

The properties file needs to hold the user name and encrypted password for modifying the database

@author Gregory Dougherty

Constructor Summary

SetFileLocations()

Method Summary

static void	main(String[] args)
static void	setFileLocations(String propertiesPath, String dataFilePath) Parse the files and add the information to the database

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SetFileLocations

public SetFileLocations()

Method Detail

main

public static final void main(String[] args)

Parameters:

args -

setFileLocations

public static final void setFileLocations(String propertiesPath,
                                          String dataFilePath)

Parse the files and add the information to the database

Parameters:

propertiesPath - Path to the properties file

dataFilePath - Path to the data file