FastQCFastQC Report
Thu 9 Jan 2014
GSM798425_MCF7_3_IP_chr17.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename GSM798425_MCF7_3_IP_chr17.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 1181015
Filtered Sequences 0
Sequence length 36
%GC 45

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[OK] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CTGGG 92445 3.4800267 4.400965 1
CCCAG 91900 3.3328736 3.696147 26
CCAGG 88340 3.2463725 3.7572203 23
CCTGG 87350 3.2450728 3.9802797 1
TTTTT 182175 3.2163825 3.948966 30
AAAAA 180020 3.0102103 3.7518039 1