FastQCFastQC Report
Thu 9 Jan 2014
GSM798424_MCF7_2_IP_chr17.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename GSM798424_MCF7_2_IP_chr17.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 926324
Filtered Sequences 0
Sequence length 36
%GC 45

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[OK] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
CTGGG 72955 3.2785509 4.554838 1
CCCAG 72470 3.2615561 3.773096 23
CCAGG 69315 3.0855618 4.0057673 1
CCTGG 67775 3.0793278 4.0666857 1
TTTTT 124705 3.057741 4.0294943 28