FastQCFastQC Report
Thu 9 Jan 2014
GSM798440_MCF7_Input_chr17.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename GSM798440_MCF7_Input_chr17.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 909306
Filtered Sequences 0
Sequence length 36
%GC 47

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 121695 3.3970401 5.0459228 31
CTGGG 80815 3.3871646 4.8662844 1
CCCAG 82210 3.3462403 3.73719 22
AAAAA 121255 3.2718613 4.5427246 1
CCAGG 77805 3.2027473 4.135461 1
CCTGG 74235 3.0765953 3.9564354 1