FastQCFastQC Report
Thu 9 Jan 2014
GSM798423_MCF7_1_IP_chr17.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename GSM798423_MCF7_1_IP_chr17.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 1001495
Filtered Sequences 0
Sequence length 36
%GC 49

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[OK] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[OK] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[WARN] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 116195 3.4037294 4.6412306 29
CTGGG 97870 3.3802505 4.222961 1
CCCAG 97880 3.2493744 3.6691601 1
AAAAA 111145 3.2222655 4.1809006 2
CCTGG 94955 3.2186222 4.0354137 1
CCAGG 95110 3.2172074 4.3699107 1