MAKE_JSON_SCRIPT_PATH=src/test/resources/buildCatalog/ITCase_makeJson.sh

# Only way I could control writing out of TJSON in compile.sh script, and Reading it back in
# from known place, was to create it into a specific, known full path passed to the
# compile.sh script as arg $1.
MAKE_JSON_ARGS=TARGET_DIRECTORY_VAR/ITCase_tjsonInput.txt
MAKE_JSON_OUTPUT_FILE_PATH=TARGET_DIRECTORY_VAR/ITCase_tjsonInput.txt

TARGET_DIR=TARGET_DIRECTORY_VAR
CATALOG_PREFIX=IT_Test_BuildCatalog

# We should beable to figure this out from target dir and not have them
# restate this value. it is a duplicate of other info.
#PREVIOUS_CATALOG_PATH=TARGET_DIRECTORY_VAR/IT_Test_BuildCatalog.tsv.bgz

# Was getting permission denied in TjsonToCalalog when seting up temp file:
# at edu.mayo.bior.pipeline.createcatalog.TjsonToCatalog.createCatalog(TjsonToCatalog.java:85)
# code:  File tempFile = File.createTempFile("myTempFileToSort", ".tmp", tempDir);
# Would rather the command did this for me!
TEMP_DIR=TEMP_DIRECTORY_VAR
#TEMP_DIR=

DATA_SOURCE=IT_CASE_TEST_SRC_NAME
DATA_SOURCE_VERSION=142
DATA_SOURCE_BUILD=GRCh37
DATA_SOURCE_RELEASE_DATE=2018-05-23

INDEXES=RSID