Should run the following test cases, and verify that files were cleaned up, vcf or vcf.gz file created, status file created, log file created, correct Temp directory used


### BAD - Don't Cleanup, and don't use config file, but DO convert to VCF
#   bior_annotate_blaster  my.100.bad.vcf  Bad/my.100.bad.out.vcf.gz  $chunk  $email  -v -s  Bad/status.txt  -l Bad/my.log  -t Bad/Temp  --noCleanup
### Good - Cleanup, don't use config file, don't convert to VCF
#   bior_annotate_blaster  my.100.vcf  Good/my.100.out.vcf.gz  $chunk  $email   -s  Good/status.txt   -t Good/Temp
### Good - Cleanup, don't use config file, but convert to vcf
#   bior_annotate_blaster  my.100.vcf  GoodVcf/my.100.out.vcf.gz  $chunk  $email  -v -s GoodVcf/status.txt  -l GoodVcf/my.log  -t GoodVcf/Temp 
