Biomedical Statistics and Informatics Software Packages


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Division Overview

VCF-Miner – Sample VCFs

Here is a sample VCF file to get started

VCF Files Used For Performance Tests:

# File Size (zip?) Variants Samples INFO
KeyVals/Line
(Avg)
1 1KG.chr22.anno.infocol.vcf.gz ​980MB (gzip) ​348,110 ​629 ​24.9
2 1KG.chr22.anno.vcf.gz 918MB (gzip) 346,660 629 6.6
3 1KG.chr22.anno.10kLines.vcf.bgz 28MB (bgzip) 9,981 629 5.7
4 1KG.chr22.anno.20kLines.vcf.bgz 57MB (bgzip) 19,876 629 ​23.6
5 1KG.chr22.anno.infocol.10kLines.vcf.bgz 29MB (bgzip) 9,876 629 ​21.4
6 HG00098.anno.vcf.gz ​1.9MB (gzip) ​46,311 1 ​25.7
7 HG00098.vcf.gz ​1.2MB (gzip) ​46,065 ​1 ​10.6
8 NA12878.trio.vcf.gz ​16.4MB (gzip) ​74,362 ​3 ​77.9

Page last modified: March 7, 2017