trace-rrbs v0.1: Targeted Alignment and Artificial Cytosine Elimination for RRBS for Illumina next-generation sequencing data.
Targeted Alignment and Artificial Cytosine Elimination for RRBS (TRACE-RRBS) as a full pipeline for mapping bisulfite se-quencing data using bowtie2 and then generating CpG level data.
- User Manual(.pdf)
- Source Code(.tar.gz, includes source code, 32MB)
- Simulated Data (hg19)(.tar.gz, includes Paired End Fastqs, 281MB)
- Virtual Machine Image(1.6GB, requires free Virtual Box software and a computer with greater than 4GB of memory)
Authors: Baheti, Saurabh ; Kanwar, Rahul ; Sun Zhifu
Page last modified: September 14, 2015