eSNV-Detect v1.0: Reliable Identification of Variants Using RNA-seq Data
The eSNV-Detect is a method to detect expressed single nucleotide variants (eSNVs) with high specificity and sensitivity from the high throughput transcriptome sequencing data. Alignments from multiple aligers are used to cover the aligner bias and multiple genomic features are used to improve the specificity. For the expressed SNVs detected, it can also identify the amino acid change and classify the protein domains.
The tool can be configured to run on a single Linux machine.
Source (.tar.gz, includes reference files, 39MB)
User Manual (.pdf)
Authors: Tang, Xiaojia ; Baheti, Saurabh ; Kalari, Krishna R.
Page last modified: November 25, 2015